C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal peptide, CUB domain, EGF-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000615096 SCUBE1-201 ENSG00000159307 9606 - 22:43203992-43343283 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverLungMuscleOvaryPlacentaENST00000615096
Transcript ID Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta
ENST00000615096 1.417±0.00 0.290±0.00 0.644±0.00 1.802±0.00 1.457±0.00 0.956±0.00 0.383±0.00 2.090±0.00 4.066±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LG CIL_0008LG_0001 VISTA 22:42800321-43401810
CIL_0008W4 CIL_0008W4_0001 VISTA 22:42938962-43540911
CIL_0004UW CIL_0004UW_0001 CGP 22:43166622-43343388
CIL_0004UX CIL_0004UX_0001 CGP 22:43197283-43507848

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171496 Scube1-201 protein_coding Mus_musculus 0 1391
ENSMUST00000076060 Scube1-001 protein_coding Mus_musculus 0 1391
ENSMUST00000144773 Scube1-004 retained_intron Mus_musculus 0 1391
ENSMUST00000016907 Scube1-002 protein_coding Mus_musculus 0 1013
ENSMUST00000043634 Scube1-003 protein_coding Mus_musculus 0 645

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