C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159753 RLTPR 9606 + 16:67644919-67657569 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334583 RLTPR-001 67644919-67657569 protein_coding
  ENST00000545661 RLTPR-002 67645247-67657518 protein_coding
  ENST00000602321 RLTPR-003 67647869-67653205 retained_intron
  ENST00000602368 RLTPR-010 67654518-67657569 nonsense_mediated_decay
  ENST00000602467 RLTPR-005 67645165-67646247 retained_intron
  ENST00000602562 RLTPR-007 67648507-67650120 retained_intron
  ENST00000602563 RLTPR-004 67644988-67647612 nonsense_mediated_decay
  ENST00000602633 RLTPR-008 67649925-67652008 retained_intron
  ENST00000602705 RLTPR-012 67656840-67657566 retained_intron
  ENST00000602742 RLTPR-006 67647447-67648477 retained_intron
  ENST00000602924 RLTPR-013 67652965-67654461 retained_intron
  ENST00000602931 RLTPR-009 67651886-67653213 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLungOvaryENST00000334583ENST00000545661ENST00000602368ENST00000602467ENST00000602562
Transcript ID Adrenal Brain Breast Colon Lung Ovary
ENST00000334583 N/A N/A N/A N/A 1.031±0.00 N/A
ENST00000545661 N/A N/A 0.051±0.00 0.076±0.00 N/A 2.003±0.00
ENST00000602368 26.743±0.00 13.184±0.00 N/A N/A N/A 0.329±0.00
ENST00000602467 N/A N/A N/A N/A 1.432±0.00 N/A
ENST00000602562 N/A N/A N/A N/A N/A 4.353±3.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LW CIL_0006LW_0002 CGP 16:67562407-67657569
CIL_0005A9 CIL_0005A9_0001 CGP 16:67644919-67660815

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001772 IEA immunological synapse
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005911 IEA cell-cell junction
GO:0008290 IEA F-actin capping protein complex
GO:0016020 IDA membrane
GO:0016477 IEA cell migration
GO:0030011 IEA maintenance of cell polarity
GO:0032729 IEA positive regulation of interferon-gamma production
GO:0042102 IEA positive regulation of T cell proliferation
GO:0045184 IEA establishment of protein localization
GO:0045591 IEA positive regulation of regulatory T cell differentiation
GO:0048538 IEA thymus development
GO:0048872 IEA homeostasis of number of cells
GO:0050852 IEA T cell receptor signaling pathway
GO:1900042 IEA positive regulation of interleukin-2 secretion
GO:1902715 IEA positive regulation of interferon-gamma secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056639 RLTPR RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing protein_coding Danio_rerio
ENSMUSG00000050357 Rltpr RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing protein_coding Mus_musculus

Loading