C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006LW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000056621-ENSDARG00000056639 CGP 7955 18:22066703-22268016
GeneTranscriptPositionBiotype
ENSDARG00000056621 (ctcf)
CCCTC-binding factor (zinc finger protein) 		ENSDART00000079139 (ctcf-001) 22066703-22074083 protein_coding
ENSDART00000151919 (ctcf-003) 22067795-22069071 protein_coding
ENSDART00000151922 (ctcf-002) 22066740-22069254 protein_coding
ENSDARG00000056628 (tmem170a)
transmembrane protein 170A 		ENSDART00000079158 (tmem170a-001) 22186418-22195276 protein_coding
ENSDARG00000056639 (RLTPR)
RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing 		ENSDART00000050311 (RLTPR-201) 22083433-22268016 protein_coding
ENSDART00000141051 (RLTPR-001) 22083346-22177082 protein_coding
ENSDARG00000095086 (rltpr)
RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing 		ENSDART00000115388 (rltpr-001) 22196762-22267478 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006LW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000102974-ENSG00000159753 CGP 9606 16:67562407-67657569
GeneTranscriptPositionBiotype
ENSG00000102974 (CTCF)
CCCTC-binding factor (zinc finger protein) 		ENST00000264010 (CTCF-001) 67562407-67639183 protein_coding
ENST00000401394 (CTCF-002) 67562407-67639183 protein_coding
ENST00000566078 (CTCF-003) 67562538-67612146 retained_intron
ENSG00000159753 (RLTPR)
RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing 		ENST00000334583 (RLTPR-001) 67644919-67657569 protein_coding
ENST00000545661 (RLTPR-002) 67645247-67657518 protein_coding
ENST00000602321 (RLTPR-003) 67647869-67653205 retained_intron
ENST00000602368 (RLTPR-010) 67654518-67657569 nonsense_mediated_decay
ENST00000602467 (RLTPR-005) 67645165-67646247 retained_intron
ENST00000602562 (RLTPR-007) 67648507-67650120 retained_intron
ENST00000602563 (RLTPR-004) 67644988-67647612 nonsense_mediated_decay
ENST00000602633 (RLTPR-008) 67649925-67652008 retained_intron
ENST00000602705 (RLTPR-012) 67656840-67657566 retained_intron
ENST00000602742 (RLTPR-006) 67647447-67648477 retained_intron
ENST00000602924 (RLTPR-013) 67652965-67654461 retained_intron
ENST00000602931 (RLTPR-009) 67651886-67653213 retained_intron
ENSG00000237718 (AC009095.4)
 ENST00000388909 (AC009095.4-001) 67614381-67615342 antisense
ENSG00000261386 (CTD-2012K14.6)
 ENST00000565929 (CTD-2012K14.6-001) 67549219-67549733 lincRNA
ENST00000605277 (CTD-2012K14.6-002) 67549214-67563958 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006LW_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005698-ENSMUSG00000050357 CGP 10090 8:105636568-105698178
GeneTranscriptPositionBiotype
ENSMUSG00000005698 (Ctcf)
CCCTC-binding factor 		ENSMUST00000005841 (Ctcf-001) 105636579-105682922 protein_coding
ENSMUST00000128510 (Ctcf-003) 105636935-105664134 processed_transcript
ENSMUST00000129388 (Ctcf-004) 105637066-105663851 processed_transcript
ENSMUST00000132679 (Ctcf-002) 105636568-105681647 processed_transcript
ENSMUST00000137735 (Ctcf-005) 105676011-105679567 processed_transcript
ENSMUST00000156436 (Ctcf-006) 105676011-105680617 retained_intron
ENSMUSG00000038000 (Acd)
adrenocortical dysplasia 		ENSMUST00000042608 (Acd-201) 105698159-105701095 protein_coding
ENSMUSG00000050357 (Rltpr)
RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing 		ENSMUST00000062574 (Rltpr-201) 105690906-105698178 protein_coding
ENSMUSG00000080021 (Gm5915)
predicted pseudogene 5915 		ENSMUST00000116136 (Gm5915-001) 105660334-105660787 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006LW_0001ENSDARG00000056621ENSDART00000079139ENSDART00000151919ENSDART00000151922ENSDARG00000056628ENSDART00000079158ENSDARG00000056639ENSDART00000050311ENSDART00000141051ENSDARG00000095086ENSDART00000115388CIL_0006LW_0002ENSG00000102974ENST00000264010ENST00000401394ENST00000566078ENSG00000159753ENST00000334583ENST00000545661ENST00000602321ENST00000602368ENST00000602467ENST00000602562ENST00000602563ENST00000602633ENST00000602705ENST00000602742ENST00000602924ENST00000602931ENSG00000237718ENST00000388909ENSG00000261386ENST00000565929ENST00000605277CIL_0006LW_0003ENSMUSG00000005698ENSMUST00000005841ENSMUST00000128510ENSMUST00000129388ENSMUST00000132679ENSMUST00000137735ENSMUST00000156436ENSMUSG00000038000ENSMUST00000042608ENSMUSG00000050357ENSMUST00000062574ENSMUSG00000080021ENSMUST00000116136
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006LW_0001ENSDARG00000056621ENSDART00000079139ENSDARG00000056628ENSDART00000079158ENSDARG00000056639ENSDART00000050311ENSDART00000141051ENSDARG00000095086ENSDART00000115388CIL_0006LW_0002ENSG00000102974ENST00000264010ENST00000401394ENST00000566078ENSG00000159753ENST00000334583ENST00000545661ENST00000602368ENST00000602467ENST00000602562ENSG00000237718ENST00000388909ENSG00000261386ENST00000565929ENST00000605277CIL_0006LW_0003ENSMUSG00000005698ENSMUST00000005841ENSMUST00000128510ENSMUST00000129388ENSMUST00000132679ENSMUST00000137735ENSMUST00000156436ENSMUSG00000038000ENSMUST00000042608ENSMUSG00000050357ENSMUST00000062574ENSMUSG00000080021ENSMUST00000116136
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000056621 ENSDART00000079139 N/A N/A N/A 23.202±3.93 N/A N/A 7.426±1.77 8.744±1.86 1.373±0.00 N/A 5.256±0.00 N/A N/A N/A
ENSDART00000151919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000056628 ENSDART00000079158 N/A N/A N/A 5.551±0.55 N/A N/A 4.360±1.30 3.521±0.92 N/A N/A 1.601±0.00 N/A N/A N/A
ENSDARG00000056639 ENSDART00000050311 N/A N/A N/A 1.410±0.00 N/A N/A 1.402±0.79 2.702±1.56 N/A N/A N/A N/A N/A N/A
ENSDART00000141051 N/A N/A N/A 8.802±5.79 N/A N/A N/A N/A 0.625±0.00 N/A 0.859±0.00 N/A N/A N/A
ENSDARG00000095086 ENSDART00000115388 N/A N/A N/A 5.189±1.89 N/A N/A 4.717±1.48 8.332±2.00 0.695±0.00 N/A 1.331±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102974 ENST00000264010 10.008±0.00 11.076±0.00 1.609±0.00 6.291±3.21 6.010±2.73 7.691±4.10 4.460±3.73 5.577±3.62 3.431±0.13 6.045±1.70 5.370±4.28 10.583±9.00 7.619±0.55 7.662±2.98
ENST00000401394 N/A 4.485±0.00 N/A N/A 1.811±0.00 3.370±0.00 N/A 5.260±0.00 1.030±0.00 1.626±0.22 2.912±0.00 5.528±0.55 4.789±2.12 2.877±0.52
ENST00000566078 N/A N/A N/A N/A N/A N/A 0.307±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000159753 ENST00000334583 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.031±0.00 N/A N/A N/A N/A
ENST00000545661 N/A N/A N/A N/A 0.051±0.00 0.076±0.00 N/A N/A N/A N/A N/A 2.003±0.00 N/A N/A
ENST00000602321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602368 N/A 26.743±0.00 N/A 13.184±0.00 N/A N/A N/A N/A N/A N/A N/A 0.329±0.00 N/A N/A
ENST00000602467 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.432±0.00 N/A N/A N/A N/A
ENST00000602562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.353±3.56 N/A N/A
ENST00000602563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000237718 ENST00000388909 0.288±0.00 0.970±0.00 N/A 0.218±0.00 0.323±0.14 0.151±0.00 0.452±0.00 0.194±0.00 0.056±0.00 0.112±0.00 N/A 0.216±0.04 0.123±0.00 0.665±0.51
ENSG00000261386 ENST00000565929 N/A 0.522±0.00 0.361±0.00 0.384±0.17 0.307±0.20 0.487±0.00 0.097±0.00 0.300±0.08 0.137±0.11 N/A N/A 0.442±0.35 0.134±0.00 0.130±0.00
ENST00000605277 N/A 0.497±0.00 N/A 0.186±0.00 0.315±0.28 0.678±0.00 0.119±0.00 N/A 0.395±0.00 0.655±0.56 N/A 0.140±0.00 N/A 0.068±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005698 ENSMUST00000005841 4.593±2.83 2.918±0.70 8.186±0.72 14.198±9.13 3.396±1.34 2.584±0.78 2.628±0.15 3.574±1.62 6.970±5.53 6.583±1.60 4.136±2.72 4.923±3.04 8.399±0.67 1.895±0.50
ENSMUST00000128510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.030±0.00
ENSMUST00000129388 N/A 1.982±0.62 N/A N/A N/A 2.181±0.11 N/A N/A N/A N/A N/A 2.529±0.64 N/A N/A
ENSMUST00000132679 1.828±0.32 2.466±0.44 3.561±0.00 4.967±0.00 1.977±0.20 3.782±0.90 1.749±0.10 3.067±0.72 3.862±1.64 3.811±0.59 N/A 4.058±1.90 5.528±2.32 1.262±0.00
ENSMUST00000137735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.111±0.00
ENSMUST00000156436 N/A N/A N/A 21.647±0.00 N/A N/A N/A N/A N/A N/A N/A 51.008±0.00 31.885±20.80 7.514±0.00
ENSMUSG00000038000 ENSMUST00000042608 15.969±2.18 18.022±3.24 8.950±0.46 21.891±8.24 19.992±6.82 13.198±2.31 5.968±1.40 14.231±1.12 8.980±1.95 14.561±2.09 2.068±0.35 15.783±6.82 9.195±4.81 17.387±6.90
ENSMUSG00000050357 ENSMUST00000062574 N/A N/A N/A 3.903±0.09 4.912±1.31 1.292±0.09 0.525±0.00 0.996±0.01 1.040±0.16 1.519±0.12 1.323±0.00 0.528±0.00 1.059±0.51 N/A
ENSMUSG00000080021 ENSMUST00000116136 2.569±0.73 1.076±0.42 1.072±0.22 0.803±0.37 1.721±0.29 2.777±2.12 2.156±0.44 4.402±2.62 1.617±1.27 5.641±1.57 0.164±0.01 2.760±2.38 1.274±0.55 1.113±0.59

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