C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family F (GCN20), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000161204 ABCF3 9606 + 3:184186023-184194012 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000292808 ABCF3-002 184186174-184194005 protein_coding
  ENST00000421340 ABCF3-010 184186095-184187958 nonsense_mediated_decay
  ENST00000429586 ABCF3-001 184186023-184194007 protein_coding
  ENST00000463685 ABCF3-012 184186160-184187046 retained_intron
  ENST00000466416 ABCF3-015 184186199-184187658 retained_intron
  ENST00000466742 ABCF3-008 184189830-184194006 retained_intron
  ENST00000468892 ABCF3-007 184189633-184194002 retained_intron
  ENST00000471226 ABCF3-016 184188314-184189725 retained_intron
  ENST00000472608 ABCF3-020 184188334-184189959 retained_intron
  ENST00000473311 ABCF3-003 184186176-184194012 retained_intron
  ENST00000475728 ABCF3-019 184188790-184189701 retained_intron
  ENST00000478288 ABCF3-013 184186161-184187901 retained_intron
  ENST00000480539 ABCF3-018 184193150-184193769 retained_intron
  ENST00000480562 ABCF3-009 184190864-184194006 retained_intron
  ENST00000481116 ABCF3-014 184186191-184187613 retained_intron
  ENST00000485921 ABCF3-011 184186104-184187283 retained_intron
  ENST00000489719 ABCF3-017 184188809-184189880 retained_intron
  ENST00000498136 ABCF3-005 184186196-184188827 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000292808ENST00000429586ENST00000468892ENST00000473311ENST00000498136
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000292808 5.924±0.00 7.992±0.00 N/A 6.149±0.00 8.679±0.00 4.019±1.23 N/A 9.593±0.00 5.571±0.00 6.047±0.00 6.091±0.00 5.558±0.00 3.861±0.00 N/A
ENST00000429586 8.862±0.00 9.927±0.00 2.424±0.00 10.698±4.19 5.881±4.87 3.449±1.98 8.156±5.90 9.076±4.34 4.819±1.32 2.439±0.34 7.812±4.14 26.921±18.25 20.536±3.76 22.155±1.52
ENST00000468892 N/A 9.931±0.00 N/A N/A N/A N/A N/A N/A 4.579±0.00 3.879±0.00 N/A 10.871±0.00 N/A N/A
ENST00000473311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.891±0.00 N/A N/A N/A
ENST00000498136 N/A N/A 2.851±0.00 N/A 1.961±0.00 N/A N/A N/A 2.149±0.00 3.227±0.00 N/A 3.105±0.00 7.799±0.00 6.800±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G3 CIL_0005G3_0001 CGP 3:184135038-184684758
CIL_0005G2 CIL_0005G2_0001 CGP 3:184174689-184194012
CIL_0005FP CIL_0005FP_0001 CGP 3:184186023-184242329

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0016020 IDA membrane
GO:0016887 IEA ATPase activity
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089705 ABCF3 ATP-binding cassette, sub-family F (GCN20), member 3 protein_coding Danio_rerio
ENSMUSG00000003234 Abcf3 ATP-binding cassette, sub-family F (GCN20), member 3 protein_coding Mus_musculus

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