C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family F (GCN20), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000292808 ABCF3-002 ENSG00000161204 9606 + 3:184186174-184194005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENST00000292808
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENST00000292808 5.924±0.00 7.992±0.00 6.149±0.00 8.679±0.00 4.019±1.23 9.593±0.00 5.571±0.00 6.047±0.00 6.091±0.00 5.558±0.00 3.861±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G3 CIL_0005G3_0001 CGP 3:184135038-184684758
CIL_0005G2 CIL_0005G2_0001 CGP 3:184174689-184194012
CIL_0005FP CIL_0005FP_0001 CGP 3:184186023-184242329

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0016020 IDA membrane
GO:0016887 IEA ATPase activity
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003319 Abcf3-001 protein_coding Mus_musculus 0 2625
ENSMUST00000154660 Abcf3-005 retained_intron Mus_musculus 0 1046
ENSMUST00000152339 Abcf3-004 retained_intron Mus_musculus 0 756
ENSMUST00000135861 Abcf3-002 retained_intron Mus_musculus 0 379
ENSDART00000130897 ABCF3-201 protein_coding Danio_rerio 0 355
ENSMUST00000148679 Abcf3-003 retained_intron Mus_musculus 0 351

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