C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family F (GCN20), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003234 Abcf3 10090 + 16:20548577-20561379 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003319 Abcf3-001 20548577-20561379 protein_coding
  ENSMUST00000135861 Abcf3-002 20559344-20560270 retained_intron
  ENSMUST00000148679 Abcf3-003 20559657-20560818 retained_intron
  ENSMUST00000152339 Abcf3-004 20549668-20551669 retained_intron
  ENSMUST00000154660 Abcf3-005 20550577-20558873 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003319ENSMUST00000135861ENSMUST00000152339ENSMUST00000154660
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003319 12.629±0.64 3.198±0.69 9.406±1.09 11.458±4.15 6.024±1.68 6.918±0.96 5.529±1.42 9.693±2.36 8.727±2.95 7.660±1.10 9.511±2.51 8.447±4.34 12.000±2.53 15.594±8.34
ENSMUST00000135861 N/A 10.416±1.13 N/A N/A 7.931±0.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.281±0.00 N/A N/A
ENSMUST00000154660 9.543±1.18 7.010±1.08 N/A 17.131±0.00 8.204±1.85 4.913±0.00 N/A 9.334±2.04 7.271±0.34 10.679±0.00 N/A N/A 16.791±0.00 19.585±2.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G2 CIL_0005G2_0002 CGP 16:20535478-20561379
CIL_0005FP CIL_0005FP_0002 CGP 16:20548577-20605377

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016887 IEA ATPase activity
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089705 ABCF3 ATP-binding cassette, sub-family F (GCN20), member 3 protein_coding Danio_rerio
ENSG00000161204 ABCF3 ATP-binding cassette, sub-family F (GCN20), member 3 protein_coding Homo_sapiens

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