C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family F (GCN20), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429586 ABCF3-001 ENSG00000161204 9606 + 3:184186023-184194007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000429586
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000429586 8.862±0.00 9.927±0.00 2.424±0.00 10.698±4.19 5.881±4.87 3.449±1.98 8.156±5.90 9.076±4.34 4.819±1.32 2.439±0.34 7.812±4.14 26.921±18.25 20.536±3.76 22.155±1.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G3 CIL_0005G3_0001 CGP 3:184135038-184684758
CIL_0005G2 CIL_0005G2_0001 CGP 3:184174689-184194012
CIL_0005FP CIL_0005FP_0001 CGP 3:184186023-184242329

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0016020 IDA membrane
GO:0016887 IEA ATPase activity
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003319 Abcf3-001 protein_coding Mus_musculus 0 2747
ENSMUST00000154660 Abcf3-005 retained_intron Mus_musculus 0 1046
ENSMUST00000152339 Abcf3-004 retained_intron Mus_musculus 0 756
ENSMUST00000135861 Abcf3-002 retained_intron Mus_musculus 0 379
ENSDART00000130897 ABCF3-201 protein_coding Danio_rerio 0 355
ENSMUST00000148679 Abcf3-003 retained_intron Mus_musculus 0 351

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