C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: plexin domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000161381 PLXDC1 9606 - 17:39063303-39154394 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315392 PLXDC1-001 39063303-39151649 protein_coding
  ENST00000394318 PLXDC1-009 39067130-39151519 retained_intron
  ENST00000415163 PLXDC1-004 39108123-39152571 protein_coding
  ENST00000441877 PLXDC1-003 39087629-39152612 protein_coding
  ENST00000444435 PLXDC1-006 39096868-39107468 processed_transcript
  ENST00000444911 PLXDC1-008 39067160-39152699 protein_coding
  ENST00000461225 PLXDC1-002 39067132-39153232 retained_intron
  ENST00000493200 PLXDC1-005 39067132-39132037 processed_transcript
  ENST00000577838 PLXDC1-015 39107407-39112177 processed_transcript
  ENST00000577941 PLXDC1-014 39109248-39153033 processed_transcript
  ENST00000578277 PLXDC1-018 39067922-39070471 retained_intron
  ENST00000578390 PLXDC1-010 39067130-39151519 nonsense_mediated_decay
  ENST00000578517 PLXDC1-007 39067130-39153027 retained_intron
  ENST00000578808 PLXDC1-013 39087608-39153032 nonsense_mediated_decay
  ENST00000579190 PLXDC1-011 39108202-39154394 protein_coding
  ENST00000579279 PLXDC1-020 39077949-39107487 protein_coding
  ENST00000579417 PLXDC1-017 39072014-39078008 retained_intron
  ENST00000580667 PLXDC1-019 39108715-39153050 processed_transcript
  ENST00000582025 PLXDC1-016 39069981-39079270 retained_intron
  ENST00000583285 PLXDC1-012 39126939-39153050 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315392ENST00000394318ENST00000441877ENST00000444435ENST00000444911ENST00000577838ENST00000578517ENST00000579279ENST00000582025
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315392 0.170±0.00 0.354±0.00 N/A 1.593±0.00 0.466±0.00 1.045±0.00 1.469±0.00 0.116±0.00 N/A N/A 0.136±0.00 0.170±0.00 0.309±0.11 N/A
ENST00000394318 0.238±0.00 1.915±0.00 0.451±0.00 N/A 1.402±0.00 1.295±0.00 1.655±0.00 0.782±0.00 N/A N/A N/A 4.527±1.89 1.923±1.28 0.644±0.00
ENST00000441877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.369±0.00 N/A N/A
ENST00000444435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.037±0.00 N/A N/A N/A
ENST00000444911 0.435±0.00 1.810±0.00 N/A 3.051±1.10 1.755±0.17 2.262±1.48 2.078±1.22 0.687±0.00 0.452±0.00 3.348±0.00 0.495±0.10 5.136±2.04 2.493±0.12 7.343±6.38
ENST00000577838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.373±0.00 N/A N/A N/A
ENST00000578517 N/A N/A N/A 0.487±0.00 N/A N/A N/A N/A N/A 0.497±0.00 N/A N/A N/A N/A
ENST00000579279 N/A N/A N/A N/A 5.637±0.00 N/A N/A N/A N/A N/A 2.401±0.00 N/A N/A N/A
ENST00000582025 1.313±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y8 CIL_0005Y8_0001 CGP 17:38936432-39154394
CIL_0006QJ CIL_0006QJ_0001 CGP 17:39063303-39167484

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 NAS angiogenesis
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005615 NAS extracellular space
GO:0005622 NAS intracellular
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005923 IEA tight junction
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0021510 IEA spinal cord development
GO:0030425 IEA dendrite
GO:0043025 IEA neuronal cell body
GO:0043235 IDA receptor complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078417 plxdc1 plexin domain containing 1 protein_coding Danio_rerio
ENSMUSG00000017417 Plxdc1 plexin domain containing 1 protein_coding Mus_musculus

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