C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: plexin domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017417 Plxdc1 10090 - 11:97923238-97986444 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017561 Plxdc1-001 97923238-97986444 protein_coding
  ENSMUST00000107564 Plxdc1-004 97978256-97986430 protein_coding
  ENSMUST00000107565 Plxdc1-003 97923656-97986399 protein_coding
  ENSMUST00000141708 Plxdc1-002 97936843-97986433 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017561ENSMUST00000107564ENSMUST00000107565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017561 1.928±0.76 3.585±1.00 2.055±0.26 0.623±0.61 1.775±0.58 0.902±0.22 2.014±0.51 0.331±0.09 0.294±0.16 8.113±1.52 1.453±0.45 3.227±1.47 0.238±0.26 8.411±6.76
ENSMUST00000107564 N/A 5.727±2.23 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.464±1.02 N/A N/A
ENSMUST00000107565 0.593±0.32 1.946±0.48 N/A 1.495±0.00 0.829±0.37 0.475±0.05 0.896±0.12 0.100±0.05 0.125±0.04 2.257±0.09 0.307±0.00 1.202±0.48 0.062±0.04 7.601±5.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y8 CIL_0005Y8_0002 CGP 11:97853826-97986444
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_0006QJ CIL_0006QJ_0002 CGP 11:97923238-97996181

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 ISO plasma membrane
GO:0005923 IEA tight junction
GO:0016021 IEA integral component of membrane
GO:0021510 IEA spinal cord development
GO:0030425 IEA dendrite
GO:0043025 IEA neuronal cell body
GO:0043235 ISO receptor complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078417 plxdc1 plexin domain containing 1 protein_coding Danio_rerio
ENSG00000161381 PLXDC1 plexin domain containing 1 protein_coding Homo_sapiens

Loading