C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: post-GPI attachment to proteins 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000161395 PGAP3 9606 - 17:39671122-39696797 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300658 PGAP3-001 39671122-39688107 protein_coding
  ENST00000309862 PGAP3-005 39671123-39688057 retained_intron
  ENST00000378011 PGAP3-002 39671123-39688057 protein_coding
  ENST00000429199 PGAP3-004 39672776-39688057 protein_coding
  ENST00000577337 PGAP3-010 39673175-39684698 nonsense_mediated_decay
  ENST00000579146 PGAP3-003 39671122-39688057 protein_coding
  ENST00000580898 PGAP3-008 39673529-39684905 retained_intron
  ENST00000582276 PGAP3-007 39673941-39688049 retained_intron
  ENST00000584620 PGAP3-009 39673875-39688001 nonsense_mediated_decay
  ENST00000584856 PGAP3-006 39684602-39696797 protein_coding
  ENST00000614824 PGAP3-201 39671142-39688025 protein_coding
  ENST00000619169 PGAP3-202 39671123-39684616 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainKidneyLiverOvaryPlacentaENST00000378011ENST00000579146ENST00000614824ENST00000619169
Transcript ID Adrenal Brain Kidney Liver Ovary Placenta
ENST00000378011 N/A N/A 2.969±0.00 N/A N/A N/A
ENST00000579146 5.439±0.00 6.667±0.00 N/A 6.287±0.00 N/A N/A
ENST00000614824 N/A N/A N/A 4.074±0.00 17.091±0.00 18.172±0.72
ENST00000619169 5.736±0.00 1.037±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_00080Z CIL_00080Z_0001 VISTA 17:39318232-39918735
CIL_00098W CIL_00098W_0001 VISTA 17:39359510-39962707
CIL_0007WH CIL_0007WH_0001 VISTA 17:39374871-39978277
CIL_0002PP CIL_0002PP_0001 CGP 17:39667981-39696797
CIL_0002PO CIL_0002PO_0001 CGP 17:39671122-39730426

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0006505 IMP GPI anchor metabolic process
GO:0006506 IEA GPI anchor biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016788 IMP hydrolase activity, acting on ester bonds
GO:0031227 IDA intrinsic component of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057531 PGAP3 post-GPI attachment to proteins 3 protein_coding Danio_rerio
ENSMUSG00000038208 Pgap3 post-GPI attachment to proteins 3 protein_coding Mus_musculus

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