C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: post-GPI attachment to proteins 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300658 PGAP3-001 ENSG00000161395 9606 - 17:39671122-39688107 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_00080Z CIL_00080Z_0001 VISTA 17:39318232-39918735
CIL_00098W CIL_00098W_0001 VISTA 17:39359510-39962707
CIL_0007WH CIL_0007WH_0001 VISTA 17:39374871-39978277
CIL_0002PP CIL_0002PP_0001 CGP 17:39667981-39696797
CIL_0002PO CIL_0002PO_0001 CGP 17:39671122-39730426

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0006505 IMP GPI anchor metabolic process
GO:0006506 IEA GPI anchor biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016788 IMP hydrolase activity, acting on ester bonds
GO:0031227 IDA intrinsic component of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090827 Pgap3-001 protein_coding Mus_musculus 0 1061
ENSMUST00000128058 Pgap3-004 processed_transcript Mus_musculus 0 558
ENSMUST00000128897 Pgap3-005 protein_coding Mus_musculus 0 279
ENSMUST00000125348 Pgap3-003 processed_transcript Mus_musculus 0 279

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