C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: post-GPI attachment to proteins 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038208 Pgap3 10090 - 11:98388677-98400490 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041218 Pgap3-002 98388677-98392072 processed_transcript
  ENSMUST00000090827 Pgap3-001 98388677-98400490 protein_coding
  ENSMUST00000125348 Pgap3-003 98398565-98400437 processed_transcript
  ENSMUST00000128058 Pgap3-004 98391322-98400414 processed_transcript
  ENSMUST00000128897 Pgap3-005 98389624-98400435 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041218ENSMUST00000090827ENSMUST00000125348ENSMUST00000128897
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.748±0.00 1.998±0.00 1.855±0.00 N/A
ENSMUST00000090827 4.369±1.45 6.426±1.25 5.089±0.83 3.409±2.28 5.975±2.30 22.380±4.61 5.830±0.72 12.283±1.33 2.353±0.75 9.025±1.19 0.773±0.46 10.938±4.06 3.303±1.04 1.774±0.33
ENSMUST00000125348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.497±0.00
ENSMUST00000128897 N/A 2.501±0.55 N/A N/A 2.731±1.34 6.003±0.64 N/A N/A N/A 2.994±0.12 N/A 6.232±1.60 N/A 0.953±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_00080Z CIL_00080Z_0002 VISTA 11:98039002-98639485
CIL_00098W CIL_00098W_0002 VISTA 11:98077499-98680383
CIL_0007WH CIL_0007WH_0002 VISTA 11:98091902-98695006
CIL_0002PP CIL_0002PP_0002 CGP 11:98386450-98400490
CIL_0002PO CIL_0002PO_0002 CGP 11:98388677-98437716

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0006505 ISS GPI anchor metabolic process
GO:0006506 IEA GPI anchor biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016788 ISS hydrolase activity, acting on ester bonds
GO:0031227 ISS intrinsic component of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057531 PGAP3 post-GPI attachment to proteins 3 protein_coding Danio_rerio
ENSG00000161395 PGAP3 post-GPI attachment to proteins 3 protein_coding Homo_sapiens

Loading