C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002PP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141744-ENSG00000161395 CGP 9606 17:39667981-39696797
GeneTranscriptPositionBiotype
ENSG00000141736 (ERBB2)
v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2 		ENST00000269571 (ERBB2-008) 39700080-39728662 protein_coding
ENST00000406381 (ERBB2-201) 39694931-39728662 protein_coding
ENST00000445658 (ERBB2-004) 39699976-39728079 protein_coding
ENST00000541774 (ERBB2-202) 39699560-39728662 protein_coding
ENST00000578199 (ERBB2-003) 39688119-39717657 protein_coding
ENST00000578373 (ERBB2-007) 39700080-39728577 nonsense_mediated_decay
ENST00000578502 (ERBB2-015) 39710356-39715292 protein_coding
ENST00000578630 (ERBB2-016) 39716974-39723968 retained_intron
ENST00000578709 (ERBB2-012) 39703194-39708492 protein_coding
ENST00000580074 (ERBB2-018) 39717429-39725203 protein_coding
ENST00000582648 (ERBB2-011) 39700074-39716311 nonsense_mediated_decay
ENST00000582788 (ERBB2-006) 39700074-39717655 retained_intron
ENST00000582818 (ERBB2-019) 39716551-39723950 protein_coding
ENST00000583038 (ERBB2-010) 39707404-39726351 retained_intron
ENST00000583391 (ERBB2-014) 39709244-39710410 retained_intron
ENST00000584014 (ERBB2-002) 39688101-39695181 retained_intron
ENST00000584099 (ERBB2-013) 39706749-39709385 protein_coding
ENST00000584450 (ERBB2-005) 39700024-39728044 protein_coding
ENST00000584601 (ERBB2-001) 39687914-39728361 protein_coding
ENST00000584684 (ERBB2-017) 39717343-39720297 retained_intron
ENST00000584888 (ERBB2-020) 39728386-39730426 processed_transcript
ENST00000584908 (ERBB2-009) 39700227-39712330 retained_intron
ENSG00000141744 (PNMT)
phenylethanolamine N-methyltransferase 		ENST00000269582 (PNMT-001) 39668158-39670475 protein_coding
ENST00000394246 (PNMT-002) 39667981-39670473 protein_coding
ENST00000581428 (PNMT-003) 39668463-39670090 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0002PP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038216-ENSMUSG00000038208 CGP 10090 11:98386450-98400490
GeneTranscriptPositionBiotype
ENSMUSG00000038208 (Pgap3)
post-GPI attachment to proteins 3 		ENSMUST00000041218 (Pgap3-002) 98388677-98392072 processed_transcript
ENSMUST00000090827 (Pgap3-001) 98388677-98400490 protein_coding
ENSMUST00000125348 (Pgap3-003) 98398565-98400437 processed_transcript
ENSMUST00000128058 (Pgap3-004) 98391322-98400414 processed_transcript
ENSMUST00000128897 (Pgap3-005) 98389624-98400435 protein_coding
ENSMUSG00000038216 (Pnmt)
phenylethanolamine-N-methyltransferase 		ENSMUST00000041301 (Pnmt-001) 98386450-98388181 protein_coding
ENSMUST00000124527 (Pnmt-002) 98386712-98387482 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002PP_0001ENSG00000141736ENST00000269571ENST00000406381ENST00000445658ENST00000541774ENST00000578199ENST00000578373ENST00000578502ENST00000578630ENST00000578709ENST00000580074ENST00000582648ENST00000582788ENST00000582818ENST00000583038ENST00000583391ENST00000584014ENST00000584099ENST00000584450ENST00000584601ENST00000584684ENST00000584888ENST00000584908ENSG00000141744ENST00000269582ENST00000394246ENST00000581428CIL_0002PP_0002ENSMUSG00000038208ENSMUST00000041218ENSMUST00000090827ENSMUST00000125348ENSMUST00000128058ENSMUST00000128897ENSMUSG00000038216ENSMUST00000041301ENSMUST00000124527
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002PP_0001ENSG00000141736ENST00000269571ENST00000406381ENST00000541774ENST00000578373ENST00000580074ENST00000583038ENST00000583391ENST00000584450ENST00000584601ENSG00000141744ENST00000269582ENST00000394246ENST00000581428CIL_0002PP_0002ENSMUSG00000038208ENSMUST00000041218ENSMUST00000090827ENSMUST00000125348ENSMUST00000128897ENSMUSG00000038216ENSMUST00000041301ENSMUST00000124527
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141736 ENST00000269571 N/A N/A N/A N/A N/A N/A 3.548±2.54 N/A N/A 1.967±0.00 N/A 24.719±0.00 N/A N/A
ENST00000406381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.589±0.00
ENST00000445658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541774 N/A N/A 5.517±0.00 N/A 1.548±0.00 4.112±0.00 N/A 3.962±0.00 1.493±0.00 N/A 2.022±1.30 24.729±0.00 30.097±7.67 N/A
ENST00000578199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578373 6.135±0.00 5.196±0.00 N/A 4.055±0.00 21.456±0.00 17.939±0.00 14.076±0.00 21.114±0.00 3.162±0.00 33.275±0.00 3.600±2.55 31.615±0.00 25.072±0.00 N/A
ENST00000578502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580074 N/A N/A 26.973±0.00 N/A 10.131±0.00 15.291±0.00 5.826±0.00 7.780±0.00 9.025±0.00 9.729±0.00 3.931±0.00 44.626±0.00 N/A N/A
ENST00000582648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583038 N/A N/A N/A N/A N/A 1.542±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583391 N/A N/A N/A N/A N/A N/A 6.117±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000584014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584450 N/A N/A N/A N/A N/A N/A 0.976±0.00 N/A N/A N/A N/A 31.095±0.00 17.768±0.00 N/A
ENST00000584601 N/A N/A N/A N/A 1.320±0.00 N/A N/A N/A 0.980±0.00 N/A N/A N/A N/A 3.078±0.00
ENST00000584684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000141744 ENST00000269582 1.117±0.00 N/A N/A 2.799±0.00 0.093±0.00 1.386±0.00 2.217±0.00 1.936±0.00 N/A 0.734±0.00 1.477±0.00 0.333±0.10 3.489±1.28 1.610±0.00
ENST00000394246 N/A 0.533±0.00 N/A 0.460±0.00 N/A 0.813±0.00 0.355±0.00 N/A N/A 0.351±0.18 2.452±0.00 0.668±0.26 1.347±0.69 0.849±0.00
ENST00000581428 N/A N/A N/A 0.128±0.00 0.449±0.00 N/A N/A N/A 0.051±0.00 N/A N/A 0.172±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038208 ENSMUST00000041218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.748±0.00 1.998±0.00 1.855±0.00 N/A
ENSMUST00000090827 4.369±1.45 6.426±1.25 5.089±0.83 3.409±2.28 5.975±2.30 22.380±4.61 5.830±0.72 12.283±1.33 2.353±0.75 9.025±1.19 0.773±0.46 10.938±4.06 3.303±1.04 1.774±0.33
ENSMUST00000125348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.497±0.00
ENSMUST00000128058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128897 N/A 2.501±0.55 N/A N/A 2.731±1.34 6.003±0.64 N/A N/A N/A 2.994±0.12 N/A 6.232±1.60 N/A 0.953±0.38
ENSMUSG00000038216 ENSMUST00000041301 0.039±0.01 217.140±43.19 0.031±0.01 0.363±0.14 0.128±0.12 N/A 0.940±0.39 0.044±0.00 0.036±0.03 1.243±0.45 0.623±0.19 0.121±0.04 N/A 0.746±0.76
ENSMUST00000124527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.214±0.00

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