C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Myb-like, SWIRM and MPN domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472487 MYSM1-001 ENSG00000162601 9606 - 1:58654739-58700092 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000472487
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000472487 1.182±0.00 1.179±0.00 0.447±0.00 1.026±0.10 0.897±0.02 1.265±0.69 0.585±0.07 0.649±0.09 0.663±0.49 1.457±0.89 0.902±0.00 0.944±0.30 0.533±0.26 1.073±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001N6 CIL_0001N6_0001 CGP 1:58654739-58784327

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003713 IDA transcription coactivator activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006338 IMP chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006508 IEA proteolysis
GO:0008237 IMP metallopeptidase activity
GO:0032403 IDA protein complex binding
GO:0035522 IMP monoubiquitinated histone H2A deubiquitination
GO:0042393 IDA histone binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075872 Mysm1-001 protein_coding Mus_musculus 0 2514
ENSMUST00000124820 Mysm1-003 processed_transcript Mus_musculus 0 946
ENSMUST00000149954 Mysm1-002 processed_transcript Mus_musculus 0 942
ENSMUST00000125427 Mysm1-004 processed_transcript Mus_musculus 0 558

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