C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000294638 LHX8-001 ENSG00000162624 9606 + 1:75128434-75161533 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000294638
Transcript ID Testis
ENST00000294638 0.167±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000037 CIL_000037_0002 CGP 1:74733152-75161533
CIL_00003C CIL_00003C_0002 CGP 1:75128434-75611116

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001674 IEA female germ cell nucleus
GO:0003677 IEA DNA binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007611 IEA learning or memory
GO:0008270 IEA zinc ion binding
GO:0008585 IEA female gonad development
GO:0021879 IEA forebrain neuron differentiation
GO:0021884 IEA forebrain neuron development
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176163 Lhx8-003 protein_coding Mus_musculus 0 1905
ENSMUST00000177846 Lhx8-001 protein_coding Mus_musculus 0 1905
ENSMUST00000169671 Lhx8-004 nonsense_mediated_decay Mus_musculus 0 791
ENSMUST00000168508 Lhx8-005 retained_intron Mus_musculus 0 636

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