C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 1 open reading frame 52
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471115 C1orf52-001 ENSG00000162642 9606 - 1:85251968-85259642 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000471115
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000471115 3.052±0.00 5.917±0.00 0.089±0.00 5.082±2.20 2.943±1.40 2.589±1.75 2.007±1.56 3.184±2.53 1.814±0.00 3.275±2.14 0.754±0.44 5.558±3.55 9.191±4.11 13.895±5.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QR CIL_0007QR_0001 VISTA 1:84924957-85525799

Gene Ontology

GO IDEvidence TypeGO Description
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039571 2410004B18Rik-001 protein_coding Mus_musculus 0 741
ENSMUST00000134575 2410004B18Rik-002 nonsense_mediated_decay Mus_musculus 0 549
ENSMUST00000190472 2410004B18Rik-007 protein_coding Mus_musculus 0 346
ENSMUST00000188034 2410004B18Rik-006 protein_coding Mus_musculus 0 292

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