C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sushi, nidogen and EGF-like domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162804 SNED1 9606 + 2:240998838-241095568 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310397 SNED1-001 240998838-241095568 protein_coding
  ENST00000342631 SNED1-201 241063378-241087461 protein_coding
  ENST00000401644 SNED1-008 241037220-241051819 protein_coding
  ENST00000401884 SNED1-005 240998838-241073986 protein_coding
  ENST00000405547 SNED1-004 240998838-241095563 protein_coding
  ENST00000420591 SNED1-013 241040116-241041362 protein_coding
  ENST00000431690 SNED1-009 241037336-241050041 protein_coding
  ENST00000466618 SNED1-003 241063378-241091853 retained_intron
  ENST00000469006 SNED1-010 241048331-241053326 processed_transcript
  ENST00000483962 SNED1-011 241051277-241052394 retained_intron
  ENST00000491761 SNED1-006 241071406-241075605 retained_intron
  ENST00000493358 SNED1-007 241035534-241040381 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310397ENST00000405547ENST00000466618
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310397 2.866±0.00 0.540±0.00 1.004±0.55 3.586±0.00 1.267±0.70 1.697±0.00 1.140±0.00 0.706±0.00 2.696±1.40 3.499±0.00 2.949±2.14 0.450±0.00 2.905±0.00
ENST00000405547 N/A N/A N/A N/A 1.309±0.00 N/A 0.729±0.00 0.622±0.00 N/A N/A N/A N/A N/A
ENST00000466618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.932±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UE CIL_0004UE_0002 CGP 2:240906330-241095568
CIL_0004GT CIL_0004GT_0001 CGP 2:240998838-241102332

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0007160 IEA cell-matrix adhesion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044433 sned1 sushi, nidogen and EGF-like domains 1 protein_coding Danio_rerio
ENSMUSG00000047793 Sned1 sushi, nidogen and EGF-like domains 1 protein_coding Mus_musculus

Loading