C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sushi, nidogen and EGF-like domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047793 Sned1 10090 + 1:93235841-93301065 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000062202 Sned1-001 93235841-93301065 protein_coding
  ENSMUST00000163688 Sned1-004 93281237-93295787 protein_coding
  ENSMUST00000165843 Sned1-006 93274431-93282317 processed_transcript
  ENSMUST00000165883 Sned1-007 93295695-93296598 retained_intron
  ENSMUST00000168122 Sned1-005 93286842-93296476 retained_intron
  ENSMUST00000172289 Sned1-002 93235851-93284507 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062202ENSMUST00000163688ENSMUST00000172289
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062202 8.824±6.31 4.373±0.78 4.516±0.60 2.154±1.36 5.213±1.38 2.300±0.67 1.710±0.25 1.886±0.71 0.557±0.46 6.248±0.54 0.783±0.15 7.457±1.62 0.529±0.33 1.062±0.34
ENSMUST00000163688 N/A 4.934±0.00 N/A N/A N/A N/A 3.532±0.00 N/A N/A N/A N/A 10.706±0.84 N/A N/A
ENSMUST00000172289 N/A 2.599±0.25 N/A N/A N/A 1.564±0.16 N/A 1.286±0.00 1.200±0.00 5.061±0.43 N/A 5.697±1.46 N/A 0.848±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UE CIL_0004UE_0003 CGP 1:93194049-93301065
CIL_0004GT CIL_0004GT_0002 CGP 1:93235841-93305915

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0007160 IEA cell-matrix adhesion
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044433 sned1 sushi, nidogen and EGF-like domains 1 protein_coding Danio_rerio
ENSG00000162804 SNED1 sushi, nidogen and EGF-like domains 1 protein_coding Homo_sapiens

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