C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sushi, nidogen and EGF-like domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310397 SNED1-001 ENSG00000162804 9606 + 2:240998838-241095568 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310397
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310397 2.866±0.00 0.540±0.00 1.004±0.55 3.586±0.00 1.267±0.70 1.697±0.00 1.140±0.00 0.706±0.00 2.696±1.40 3.499±0.00 2.949±2.14 0.450±0.00 2.905±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UE CIL_0004UE_0002 CGP 2:240906330-241095568
CIL_0004GT CIL_0004GT_0001 CGP 2:240998838-241102332

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0007160 IEA cell-matrix adhesion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062202 Sned1-001 protein_coding Mus_musculus 0 4150
ENSMUST00000172289 Sned1-002 retained_intron Mus_musculus 0 3269
ENSMUST00000163688 Sned1-004 protein_coding Mus_musculus 0 1338

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