C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calpain 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162949 CAPN13 9606 - 2:30722771-30820542 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295055 CAPN13-001 30722771-30807446 protein_coding
  ENST00000450650 CAPN13-003 30722771-30743518 nonsense_mediated_decay
  ENST00000458085 CAPN13-004 30741374-30807426 nonsense_mediated_decay
  ENST00000465450 CAPN13-007 30743144-30751226 retained_intron
  ENST00000465960 CAPN13-005 30758046-30820542 processed_transcript
  ENST00000485248 CAPN13-006 30764248-30807426 nonsense_mediated_decay
  ENST00000490786 CAPN13-008 30729541-30732484 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000295055ENST00000450650ENST00000458085ENST00000465960ENST00000485248ENST00000490786
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000295055 N/A 0.826±0.00 0.172±0.07 0.289±0.00 N/A 1.047±0.00 N/A 1.737±0.00 N/A 0.123±0.08 0.058±0.00
ENST00000450650 0.042±0.00 N/A 0.101±0.00 0.231±0.00 0.006±0.00 N/A N/A N/A 0.006±0.00 0.094±0.00 N/A
ENST00000458085 N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A 0.091±0.00 0.088±0.00
ENST00000465960 0.083±0.00 0.431±0.00 0.409±0.00 1.548±0.00 N/A N/A 0.586±0.00 N/A N/A N/A 0.053±0.00
ENST00000485248 N/A 0.214±0.00 N/A N/A N/A N/A 0.612±0.00 N/A N/A N/A N/A
ENST00000490786 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.411±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VF CIL_0000VF_0001 CGP 2:30447226-30820542
CIL_0000VE CIL_0000VE_0001 CGP 2:30722771-31155202

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004198 IBA:IEA calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005622 IEA intracellular
GO:0005737 IBA cytoplasm
GO:0006508 IBA:IEA proteolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008553 zgc:136872 zgc:136872 protein_coding Danio_rerio
ENSDARG00000052917 si:ch211-202f3.3 si:ch211-202f3.3 protein_coding Danio_rerio
ENSDARG00000077217 zgc:162184 zgc:162184 protein_coding Danio_rerio
ENSDARG00000091723 si:ch211-202f3.4 si:ch211-202f3.4 protein_coding Danio_rerio
ENSMUSG00000043705 Capn13 calpain 13 protein_coding Mus_musculus

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