C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calpain 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043705 Capn13 10090 - 17:73306464-73399296 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000095208 Capn13-201 73306464-73399296 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095208
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095208 0.094±0.06 8.725±1.12 0.019±0.00 0.058±0.01 10.375±2.57 0.077±0.05 0.337±0.16 0.014±0.01 0.244±0.19 0.063±0.00 0.042±0.02 0.011±0.01 0.197±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099K CIL_00099K_0002 VISTA 17:72722163-73324151
CIL_0000VF CIL_0000VF_0002 CGP 17:73107985-73399296
CIL_0000VE CIL_0000VE_0002 CGP 17:73306464-73710453

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005737 IBA cytoplasm
GO:0006508 IBA proteolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008553 zgc:136872 zgc:136872 protein_coding Danio_rerio
ENSDARG00000052917 si:ch211-202f3.3 si:ch211-202f3.3 protein_coding Danio_rerio
ENSDARG00000077217 zgc:162184 zgc:162184 protein_coding Danio_rerio
ENSDARG00000091723 si:ch211-202f3.4 si:ch211-202f3.4 protein_coding Danio_rerio
ENSG00000162949 CAPN13 calpain 13 protein_coding Homo_sapiens

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