C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000VF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000172954-ENSG00000162949 CGP 9606 2:30447226-30820542
GeneTranscriptPositionBiotype
ENSG00000162949 (CAPN13)
calpain 13 		ENST00000295055 (CAPN13-001) 30722771-30807446 protein_coding
ENST00000450650 (CAPN13-003) 30722771-30743518 nonsense_mediated_decay
ENST00000458085 (CAPN13-004) 30741374-30807426 nonsense_mediated_decay
ENST00000465450 (CAPN13-007) 30743144-30751226 retained_intron
ENST00000465960 (CAPN13-005) 30758046-30820542 processed_transcript
ENST00000485248 (CAPN13-006) 30764248-30807426 nonsense_mediated_decay
ENST00000490786 (CAPN13-008) 30729541-30732484 processed_transcript
ENSG00000172954 (LCLAT1)
lysocardiolipin acyltransferase 1 		ENST00000309052 (LCLAT1-001) 30447257-30644225 protein_coding
ENST00000319406 (LCLAT1-002) 30447243-30607845 protein_coding
ENST00000379509 (LCLAT1-006) 30447236-30644224 protein_coding
ENST00000465200 (LCLAT1-011) 30447236-30562190 protein_coding
ENST00000465538 (LCLAT1-012) 30447256-30533319 protein_coding
ENST00000466477 (LCLAT1-010) 30447226-30552549 protein_coding
ENST00000476038 (LCLAT1-013) 30447276-30568167 protein_coding
ENST00000476535 (LCLAT1-004) 30447403-30562193 protein_coding
ENST00000478015 (LCLAT1-008) 30447273-30640830 nonsense_mediated_decay
ENST00000488144 (LCLAT1-005) 30447249-30533266 protein_coding
ENST00000491680 (LCLAT1-007) 30447246-30640947 processed_transcript
ENST00000497423 (LCLAT1-003) 30447388-30533297 protein_coding
ENSG00000230118 (AC092569.2)
 ENST00000455192 (AC092569.2-001) 30746444-30746701 processed_pseudogene
ENSG00000278908 (RP11-523J2.1)
 ENST00000623248 (RP11-523J2.1-001) 30677762-30679895 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0000VF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000054469-ENSMUSG00000043705 CGP 10090 17:73107985-73399296
GeneTranscriptPositionBiotype
ENSMUSG00000043705 (Capn13)
calpain 13 		ENSMUST00000095208 (Capn13-201) 73306464-73399296 protein_coding
ENSMUSG00000054469 (Lclat1)
lysocardiolipin acyltransferase 1 		ENSMUST00000067545 (Lclat1-001) 73107994-73243368 protein_coding
ENSMUST00000130574 (Lclat1-002) 73107985-73161991 protein_coding
ENSMUST00000131335 (Lclat1-004) 73162989-73239908 processed_transcript
ENSMUST00000134149 (Lclat1-005) 73204150-73240371 processed_transcript
ENSMUST00000149064 (Lclat1-003) 73107988-73196778 protein_coding
ENSMUSG00000081492 (Gm9311)
predicted gene 9311 		ENSMUST00000118042 (Gm9311-001) 73190258-73191685 processed_pseudogene
ENSMUSG00000088224 (Gm25406)
predicted gene, 25406 		ENSMUST00000157599 (Gm25406-201) 73193912-73194016 snoRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VF_0001ENSG00000162949ENST00000295055ENST00000450650ENST00000458085ENST00000465450ENST00000465960ENST00000485248ENST00000490786ENSG00000172954ENST00000309052ENST00000319406ENST00000379509ENST00000465200ENST00000465538ENST00000466477ENST00000476038ENST00000476535ENST00000478015ENST00000488144ENST00000491680ENST00000497423ENSG00000230118ENST00000455192ENSG00000278908ENST00000623248CIL_0000VF_0002ENSMUSG00000043705ENSMUST00000095208ENSMUSG00000054469ENSMUST00000067545ENSMUST00000130574ENSMUST00000131335ENSMUST00000134149ENSMUST00000149064ENSMUSG00000081492ENSMUST00000118042ENSMUSG00000088224ENSMUST00000157599
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VF_0001ENSG00000162949ENST00000295055ENST00000450650ENST00000458085ENST00000465960ENST00000485248ENST00000490786ENSG00000172954ENST00000309052ENST00000319406ENST00000379509ENST00000476535ENST00000491680ENSG00000230118ENST00000455192ENSG00000278908ENST00000623248CIL_0000VF_0002ENSMUSG00000043705ENSMUST00000095208ENSMUSG00000054469ENSMUST00000067545ENSMUST00000130574ENSMUST00000149064ENSMUSG00000081492ENSMUST00000118042ENSMUSG00000088224ENSMUST00000157599
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000162949 ENST00000295055 N/A N/A N/A 0.826±0.00 0.172±0.07 0.289±0.00 N/A 1.047±0.00 N/A 1.737±0.00 N/A 0.123±0.08 N/A 0.058±0.00
ENST00000450650 N/A 0.042±0.00 N/A N/A 0.101±0.00 0.231±0.00 0.006±0.00 N/A N/A N/A 0.006±0.00 0.094±0.00 N/A N/A
ENST00000458085 N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A 0.091±0.00 N/A 0.088±0.00
ENST00000465450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465960 N/A 0.083±0.00 N/A 0.431±0.00 0.409±0.00 1.548±0.00 N/A N/A 0.586±0.00 N/A N/A N/A N/A 0.053±0.00
ENST00000485248 N/A N/A N/A 0.214±0.00 N/A N/A N/A N/A 0.612±0.00 N/A N/A N/A N/A N/A
ENST00000490786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A
ENSG00000172954 ENST00000309052 N/A 0.560±0.00 N/A 0.880±0.00 N/A N/A 1.632±0.00 N/A 0.676±0.00 N/A N/A 0.810±0.00 N/A 1.087±0.00
ENST00000319406 N/A 1.212±0.00 N/A 0.694±0.00 0.439±0.00 N/A 1.201±0.00 0.637±0.00 0.420±0.00 N/A N/A 0.533±0.13 N/A 0.787±0.00
ENST00000379509 0.508±0.00 1.729±0.00 1.762±0.00 0.740±0.46 1.173±0.78 2.273±0.98 3.576±0.61 2.700±0.66 0.805±0.05 1.400±0.10 N/A 1.868±0.98 0.557±0.18 5.049±0.00
ENST00000465200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476535 N/A N/A N/A 6.728±0.00 6.747±0.00 N/A N/A N/A 5.686±0.00 3.663±0.00 N/A 7.114±0.00 N/A N/A
ENST00000478015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491680 N/A N/A 1.223±0.00 0.920±0.00 N/A N/A N/A N/A 1.027±0.00 N/A N/A 1.640±0.00 N/A N/A
ENST00000497423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230118 ENST00000455192 N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.063±0.00 N/A N/A 0.054±0.00 N/A N/A N/A
ENSG00000278908 ENST00000623248 N/A N/A 0.299±0.00 0.019±0.00 0.043±0.00 0.071±0.00 N/A 0.042±0.00 N/A N/A N/A 0.008±0.00 N/A 0.589±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000043705 ENSMUST00000095208 0.094±0.06 N/A 8.725±1.12 0.019±0.00 0.058±0.01 10.375±2.57 0.077±0.05 0.337±0.16 0.014±0.01 0.244±0.19 0.063±0.00 0.042±0.02 0.011±0.01 0.197±0.13
ENSMUSG00000054469 ENSMUST00000067545 1.536±0.91 3.022±0.64 0.981±0.22 0.508±0.00 1.711±0.53 4.586±0.65 4.027±1.04 3.553±2.09 2.779±2.60 5.307±1.87 1.122±0.51 3.492±1.33 4.212±1.61 1.617±0.81
ENSMUST00000130574 13.433±3.38 10.535±1.23 N/A N/A 8.842±1.02 29.798±10.84 33.926±0.00 32.987±5.64 19.342±9.05 26.061±4.34 N/A 11.351±3.41 N/A 11.927±1.31
ENSMUST00000131335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149064 N/A 5.307±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.229±1.38 N/A 1.598±0.00
ENSMUSG00000081492 ENSMUST00000118042 0.287±0.14 0.243±0.13 0.048±0.02 0.023±0.00 0.420±0.13 0.469±0.18 0.269±0.08 0.225±0.20 0.186±0.12 0.314±0.02 0.026±0.00 0.534±0.35 0.048±0.03 0.116±0.06
ENSMUSG00000088224 ENSMUST00000157599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.594±0.00 N/A N/A

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