C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gamma-aminobutyric acid (GABA) A receptor, beta 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163288 GABRB1 9606 + 4:46993723-47426444 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295454 GABRB1-001 47031360-47426444 protein_coding
  ENST00000381582 GABRB1-002 47031581-47033013 retained_intron
  ENST00000509366 GABRB1-004 47031551-47043345 processed_transcript
  ENST00000510909 GABRB1-003 47031633-47403385 nonsense_mediated_decay
  ENST00000513567 GABRB1-005 46993723-47161460 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastLiverLungENST00000295454ENST00000509366ENST00000510909ENST00000513567
Transcript ID Bladder Breast Liver Lung
ENST00000295454 N/A N/A 0.052±0.00 N/A
ENST00000509366 0.365±0.00 N/A N/A N/A
ENST00000510909 N/A 0.105±0.00 N/A N/A
ENST00000513567 N/A N/A N/A 0.069±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YV CIL_0002YV_0001 CGP 4:46734827-46994407
CIL_0001N0 CIL_0001N0_0001 CGP 4:46918900-47426444
CIL_0005LI CIL_0005LI_0002 CGP 4:46993723-47463719

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004890 ISS GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 ISS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 ISS:IEA ion transport
GO:0007165 TAS signal transduction
GO:0007268 TAS synaptic transmission
GO:0015276 ISS ligand-gated ion channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 IEA:TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:0055085 TAS transmembrane transport
GO:0071420 ISS cellular response to histamine
GO:1902476 IEA chloride transmembrane transport
GO:1902711 ISS GABA-A receptor complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076127 GABRB1 gamma-aminobutyric acid (GABA) A receptor, beta 1 protein_coding Danio_rerio
ENSMUSG00000029212 Gabrb1 gamma-aminobutyric acid (GABA) A receptor, subunit beta 1 protein_coding Mus_musculus

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