C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000510909 GABRB1-003 ENSG00000163288 9606 + 4:47031633-47403385 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENST00000510909
Transcript ID Breast
ENST00000510909 0.105±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YV CIL_0002YV_0001 CGP 4:46734827-46994407
CIL_0001N0 CIL_0001N0_0001 CGP 4:46918900-47426444
CIL_0005LI CIL_0005LI_0002 CGP 4:46993723-47463719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 ISS GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 ISS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 ISS ion transport
GO:0007165 TAS signal transduction
GO:0007268 TAS synaptic transmission
GO:0015276 ISS ligand-gated ion channel activity
GO:0030054 IEA cell junction
GO:0034220 TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:0055085 TAS transmembrane transport
GO:0071420 ISS cellular response to histamine
GO:1902476 IEA chloride transmembrane transport
GO:1902711 ISS GABA-A receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031122 Gabrb1-001 protein_coding Mus_musculus 0 507

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