C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001N0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000109158-ENSG00000163288 CGP 9606 4:46918900-47426444
GeneTranscriptPositionBiotype
ENSG00000109158 (GABRA4)
gamma-aminobutyric acid (GABA) A receptor, alpha 4 		ENST00000264318 (GABRA4-001) 46918900-46994407 protein_coding
ENST00000502874 (GABRA4-005) 46971083-46993540 nonsense_mediated_decay
ENST00000508560 (GABRA4-004) 46928127-46993505 nonsense_mediated_decay
ENST00000509316 (GABRA4-002) 46992670-46993548 processed_transcript
ENST00000511523 (GABRA4-003) 46928127-46993505 nonsense_mediated_decay
ENSG00000163288 (GABRB1)
gamma-aminobutyric acid (GABA) A receptor, beta 1 		ENST00000295454 (GABRB1-001) 47031360-47426444 protein_coding
ENST00000381582 (GABRB1-002) 47031581-47033013 retained_intron
ENST00000509366 (GABRB1-004) 47031551-47043345 processed_transcript
ENST00000510909 (GABRB1-003) 47031633-47403385 nonsense_mediated_decay
ENST00000513567 (GABRB1-005) 46993723-47161460 protein_coding
CIL_0001N0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029211-ENSMUSG00000029212 CGP 10090 5:71569734-72138389
GeneTranscriptPositionBiotype
ENSMUSG00000029211 (Gabra4)
gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4 		ENSMUST00000031121 (Gabra4-201) 71569734-71658308 protein_coding
ENSMUSG00000029212 (Gabrb1)
gamma-aminobutyric acid (GABA) A receptor, subunit beta 1 		ENSMUST00000031122 (Gabrb1-001) 71699932-72138389 protein_coding
ENSMUSG00000080736 (Gm15617)
predicted gene 15617 		ENSMUST00000118973 (Gm15617-001) 72032718-72033488 processed_pseudogene
ENSMUSG00000082705 (Gm15616)
predicted gene 15616 		ENSMUST00000118662 (Gm15616-001) 72047205-72047579 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001N0_0001ENSG00000109158ENST00000264318ENST00000502874ENST00000508560ENST00000509316ENST00000511523ENSG00000163288ENST00000295454ENST00000381582ENST00000509366ENST00000510909ENST00000513567CIL_0001N0_0002ENSMUSG00000029211ENSMUST00000031121ENSMUSG00000029212ENSMUST00000031122ENSMUSG00000080736ENSMUST00000118973ENSMUSG00000082705ENSMUST00000118662
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001N0_0001ENSG00000109158ENST00000264318ENST00000502874ENST00000508560ENST00000511523ENSG00000163288ENST00000295454ENST00000509366ENST00000510909ENST00000513567CIL_0001N0_0002ENSMUSG00000029211ENSMUST00000031121ENSMUSG00000029212ENSMUST00000031122ENSMUSG00000080736ENSMUST00000118973ENSMUSG00000082705ENSMUST00000118662
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109158 ENST00000264318 N/A N/A N/A 2.563±0.37 0.007±0.00 0.016±0.00 0.853±0.22 N/A 0.042±0.00 0.009±0.01 0.004±0.00 0.002±0.00 0.067±0.00 0.014±0.00
ENST00000502874 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A 0.320±0.00 0.209±0.02
ENST00000508560 N/A N/A N/A N/A N/A N/A 1.815±0.15 N/A N/A N/A N/A N/A 1.317±1.11 0.223±0.00
ENST00000509316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511523 N/A N/A N/A N/A 0.012±0.00 N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A 0.158±0.07
ENSG00000163288 ENST00000295454 N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A
ENST00000381582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509366 N/A N/A 0.365±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510909 N/A N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513567 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029211 ENSMUST00000031121 0.171±0.15 0.049±0.03 0.122±0.03 5.060±4.30 N/A 0.035±0.01 N/A 0.118±0.04 0.023±0.01 0.109±0.03 0.007±0.00 0.372±0.12 0.025±0.02 0.074±0.05
ENSMUSG00000029212 ENSMUST00000031122 0.354±0.34 0.224±0.07 0.173±0.08 1.684±0.00 N/A N/A 0.020±0.00 0.093±0.04 0.011±0.01 0.037±0.02 0.007±0.00 0.465±0.25 0.030±0.00 0.096±0.05
ENSMUSG00000080736 ENSMUST00000118973 N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A N/A N/A N/A 0.352±0.14 N/A 0.055±0.00
ENSMUSG00000082705 ENSMUST00000118662 0.497±0.27 N/A 0.101±0.00 1.926±2.10 0.647±0.38 0.567±0.00 N/A 0.186±0.00 0.882±0.80 0.250±0.00 N/A 0.490±0.49 0.217±0.15 N/A

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