C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005LI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076127-ENSDARG00000028201 CGP 7955 13:12169585-12258905
GeneTranscriptPositionBiotype
ENSDARG00000028201 (commd8)
COMM domain containing 8 		ENSDART00000124784 (commd8-002) 12247372-12258720 nonsense_mediated_decay
ENSDART00000141606 (commd8-001) 12247231-12258905 protein_coding
ENSDARG00000076127 (GABRB1)
gamma-aminobutyric acid (GABA) A receptor, beta 1 		ENSDART00000108535 (GABRB1-201) 12169585-12244750 protein_coding
ENSDART00000139841 (GABRB1-001) 12234948-12240056 protein_coding
CIL_0005LI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163288-ENSG00000169019 CGP 9606 4:46993723-47463719
GeneTranscriptPositionBiotype
ENSG00000109158 (GABRA4)
gamma-aminobutyric acid (GABA) A receptor, alpha 4 		ENST00000264318 (GABRA4-001) 46918900-46994407 protein_coding
ENST00000502874 (GABRA4-005) 46971083-46993540 nonsense_mediated_decay
ENST00000508560 (GABRA4-004) 46928127-46993505 nonsense_mediated_decay
ENST00000509316 (GABRA4-002) 46992670-46993548 processed_transcript
ENST00000511523 (GABRA4-003) 46928127-46993505 nonsense_mediated_decay
ENSG00000163288 (GABRB1)
gamma-aminobutyric acid (GABA) A receptor, beta 1 		ENST00000295454 (GABRB1-001) 47031360-47426444 protein_coding
ENST00000381582 (GABRB1-002) 47031581-47033013 retained_intron
ENST00000509366 (GABRB1-004) 47031551-47043345 processed_transcript
ENST00000510909 (GABRB1-003) 47031633-47403385 nonsense_mediated_decay
ENST00000513567 (GABRB1-005) 46993723-47161460 protein_coding
ENSG00000169019 (COMMD8)
COMM domain containing 8 		ENST00000381571 (COMMD8-001) 47450796-47463719 protein_coding
ENST00000509220 (COMMD8-002) 47459847-47463665 retained_intron
ENSG00000260918 (RP11-731J8.2)
 ENST00000562284 (RP11-731J8.2-001) 47431960-47438959 sense_overlapping
CIL_0005LI_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029212-ENSMUSG00000029213 CGP 10090 5:71699932-72168183
GeneTranscriptPositionBiotype
ENSMUSG00000029212 (Gabrb1)
gamma-aminobutyric acid (GABA) A receptor, subunit beta 1 		ENSMUST00000031122 (Gabrb1-001) 71699932-72138389 protein_coding
ENSMUSG00000029213 (Commd8)
COMM domain containing 8 		ENSMUST00000013693 (Commd8-201) 72157000-72168183 protein_coding
ENSMUSG00000080736 (Gm15617)
predicted gene 15617 		ENSMUST00000118973 (Gm15617-001) 72032718-72033488 processed_pseudogene
ENSMUSG00000082705 (Gm15616)
predicted gene 15616 		ENSMUST00000118662 (Gm15616-001) 72047205-72047579 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005LI_0001ENSDARG00000028201ENSDART00000124784ENSDART00000141606ENSDARG00000076127ENSDART00000108535ENSDART00000139841CIL_0005LI_0002ENSG00000109158ENST00000264318ENST00000502874ENST00000508560ENST00000509316ENST00000511523ENSG00000163288ENST00000295454ENST00000381582ENST00000509366ENST00000510909ENST00000513567ENSG00000169019ENST00000381571ENST00000509220ENSG00000260918ENST00000562284CIL_0005LI_0003ENSMUSG00000029212ENSMUST00000031122ENSMUSG00000029213ENSMUST00000013693ENSMUSG00000080736ENSMUST00000118973ENSMUSG00000082705ENSMUST00000118662
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005LI_0001ENSDARG00000028201ENSDART00000124784ENSDART00000141606ENSDARG00000076127ENSDART00000108535ENSDART00000139841CIL_0005LI_0002ENSG00000109158ENST00000264318ENST00000502874ENST00000508560ENST00000511523ENSG00000163288ENST00000295454ENST00000509366ENST00000510909ENST00000513567ENSG00000169019ENST00000381571ENST00000509220ENSG00000260918ENST00000562284CIL_0005LI_0003ENSMUSG00000029212ENSMUST00000031122ENSMUSG00000029213ENSMUST00000013693ENSMUSG00000080736ENSMUST00000118973ENSMUSG00000082705ENSMUST00000118662
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000028201 ENSDART00000124784 N/A N/A N/A 1.723±0.08 N/A N/A 2.038±0.00 N/A 0.290±0.00 N/A 3.273±0.00 N/A N/A N/A
ENSDART00000141606 N/A N/A N/A 9.443±1.18 N/A N/A 5.061±4.08 4.902±3.93 0.248±0.00 N/A 7.837±0.00 N/A N/A N/A
ENSDARG00000076127 ENSDART00000108535 N/A N/A N/A 3.960±0.48 N/A N/A 0.023±0.01 0.114±0.03 0.022±0.00 N/A 0.107±0.00 N/A N/A N/A
ENSDART00000139841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.387±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109158 ENST00000264318 N/A N/A N/A 2.563±0.37 0.007±0.00 0.016±0.00 0.853±0.22 N/A 0.042±0.00 0.009±0.01 0.004±0.00 0.002±0.00 0.067±0.00 0.014±0.00
ENST00000502874 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A 0.320±0.00 0.209±0.02
ENST00000508560 N/A N/A N/A N/A N/A N/A 1.815±0.15 N/A N/A N/A N/A N/A 1.317±1.11 0.223±0.00
ENST00000509316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511523 N/A N/A N/A N/A 0.012±0.00 N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A 0.158±0.07
ENSG00000163288 ENST00000295454 N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A
ENST00000381582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509366 N/A N/A 0.365±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510909 N/A N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513567 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A
ENSG00000169019 ENST00000381571 2.998±0.00 6.040±0.00 2.031±0.00 3.127±0.47 3.104±0.93 3.226±1.04 3.171±1.93 7.592±6.46 2.578±0.26 2.434±0.07 0.854±0.01 3.390±1.19 3.372±0.46 8.032±4.30
ENST00000509220 N/A N/A N/A 3.298±0.00 N/A 2.040±0.00 1.485±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000260918 ENST00000562284 0.024±0.00 0.034±0.00 N/A 3.931±0.00 0.015±0.00 0.055±0.03 0.131±0.01 0.063±0.03 0.044±0.04 0.014±0.00 0.006±0.00 0.010±0.00 0.015±0.00 0.026±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029212 ENSMUST00000031122 0.354±0.34 0.224±0.07 0.173±0.08 1.684±0.00 N/A N/A 0.020±0.00 0.093±0.04 0.011±0.01 0.037±0.02 0.007±0.00 0.465±0.25 0.030±0.00 0.096±0.05
ENSMUSG00000029213 ENSMUST00000013693 3.915±0.36 1.173±0.45 6.839±0.44 5.809±2.81 2.517±0.55 1.971±0.43 3.002±0.51 4.433±0.76 3.487±1.72 3.664±0.38 3.617±0.89 3.271±1.40 6.486±1.95 0.904±0.42
ENSMUSG00000080736 ENSMUST00000118973 N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A N/A N/A N/A 0.352±0.14 N/A 0.055±0.00
ENSMUSG00000082705 ENSMUST00000118662 0.497±0.27 N/A 0.101±0.00 1.926±2.10 0.647±0.38 0.567±0.00 N/A 0.186±0.00 0.882±0.80 0.250±0.00 N/A 0.490±0.49 0.217±0.15 N/A

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