C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002YV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170516-ENSG00000109158 CGP 9606 4:46734827-46994407
GeneTranscriptPositionBiotype
ENSG00000109158 (GABRA4)
gamma-aminobutyric acid (GABA) A receptor, alpha 4 		ENST00000264318 (GABRA4-001) 46918900-46994407 protein_coding
ENST00000502874 (GABRA4-005) 46971083-46993540 nonsense_mediated_decay
ENST00000508560 (GABRA4-004) 46928127-46993505 nonsense_mediated_decay
ENST00000509316 (GABRA4-002) 46992670-46993548 processed_transcript
ENST00000511523 (GABRA4-003) 46928127-46993505 nonsense_mediated_decay
ENSG00000163288 (GABRB1)
gamma-aminobutyric acid (GABA) A receptor, beta 1 		ENST00000295454 (GABRB1-001) 47031360-47426444 protein_coding
ENST00000381582 (GABRB1-002) 47031581-47033013 retained_intron
ENST00000509366 (GABRB1-004) 47031551-47043345 processed_transcript
ENST00000510909 (GABRB1-003) 47031633-47403385 nonsense_mediated_decay
ENST00000513567 (GABRB1-005) 46993723-47161460 protein_coding
ENSG00000170516 (COX7B2)
cytochrome c oxidase subunit VIIb2 		ENST00000355591 (COX7B2-001) 46734827-46909231 protein_coding
ENST00000396533 (COX7B2-002) 46734827-46909207 protein_coding
ENST00000505102 (COX7B2-003) 46735095-46909235 protein_coding
ENST00000543208 (COX7B2-201) 46734832-46876760 protein_coding
CIL_0002YV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049387-ENSMUSG00000029211 CGP 10090 5:71442824-71658308
GeneTranscriptPositionBiotype
ENSMUSG00000029211 (Gabra4)
gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4 		ENSMUST00000031121 (Gabra4-201) 71569734-71658308 protein_coding
ENSMUSG00000049387 (Cox7b2)
cytochrome c oxidase subunit VIIb2 		ENSMUST00000050129 (Cox7b2-201) 71442824-71548205 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002YV_0001ENSG00000109158ENST00000264318ENST00000502874ENST00000508560ENST00000509316ENST00000511523ENSG00000163288ENST00000295454ENST00000381582ENST00000509366ENST00000510909ENST00000513567ENSG00000170516ENST00000355591ENST00000396533ENST00000505102ENST00000543208CIL_0002YV_0002ENSMUSG00000029211ENSMUST00000031121ENSMUSG00000049387ENSMUST00000050129
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002YV_0001ENSG00000109158ENST00000264318ENST00000502874ENST00000508560ENST00000511523ENSG00000163288ENST00000295454ENST00000509366ENST00000510909ENST00000513567ENSG00000170516ENST00000355591ENST00000505102ENST00000543208CIL_0002YV_0002ENSMUSG00000029211ENSMUST00000031121ENSMUSG00000049387ENSMUST00000050129
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109158 ENST00000264318 N/A N/A N/A 2.563±0.37 0.007±0.00 0.016±0.00 0.853±0.22 N/A 0.042±0.00 0.009±0.01 0.004±0.00 0.002±0.00 0.067±0.00 0.014±0.00
ENST00000502874 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A 0.320±0.00 0.209±0.02
ENST00000508560 N/A N/A N/A N/A N/A N/A 1.815±0.15 N/A N/A N/A N/A N/A 1.317±1.11 0.223±0.00
ENST00000509316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511523 N/A N/A N/A N/A 0.012±0.00 N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A 0.158±0.07
ENSG00000163288 ENST00000295454 N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A
ENST00000381582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509366 N/A N/A 0.365±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510909 N/A N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513567 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A
ENSG00000170516 ENST00000355591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.469±0.31 16.043±8.28
ENST00000396533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505102 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543208 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029211 ENSMUST00000031121 0.171±0.15 0.049±0.03 0.122±0.03 5.060±4.30 N/A 0.035±0.01 N/A 0.118±0.04 0.023±0.01 0.109±0.03 0.007±0.00 0.372±0.12 0.025±0.02 0.074±0.05
ENSMUSG00000049387 ENSMUST00000050129 N/A N/A N/A 0.206±0.07 N/A N/A 0.167±0.09 N/A N/A N/A N/A 0.098±0.03 0.079±0.05 162.752±22.39

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