C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CWC22 spliceosome-associated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163510 CWC22 9606 - 2:179944876-180007113 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000404136 CWC22-002 179945621-180007113 protein_coding
  ENST00000410053 CWC22-001 179944876-180007053 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000404136ENST00000410053
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000404136 N/A N/A 2.116±0.00 1.352±0.00 N/A 0.566±0.00 0.788±0.00 1.525±0.00 3.566±0.00 2.074±0.00 1.056±0.00 1.310±0.00 N/A 1.536±0.00
ENST00000410053 0.559±0.00 2.778±0.00 N/A 4.132±0.00 1.855±1.25 1.558±0.00 2.608±0.00 N/A 0.717±0.00 0.594±0.00 N/A 7.758±2.25 3.705±0.00 3.821±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004C1 CIL_0004C1_0002 CGP 2:179441982-180007113
CIL_0004C2 CIL_0004C2_0002 CGP 2:179944876-181076585

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005681 IDA spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0016607 IDA nuclear speck
GO:0048024 IC regulation of mRNA splicing, via spliceosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014008 cwc22 CWC22 spliceosome-associated protein homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000027014 Cwc22 CWC22 spliceosome-associated protein homolog (S. cerevisiae) protein_coding Mus_musculus
ENSMUSG00000079247 Gm13691 predicted gene 13691 protein_coding Mus_musculus
ENSMUSG00000094125 Gm13698 predicted gene 13698 protein_coding Mus_musculus
ENSMUSG00000094336 Gm13693 predicted gene 13693 protein_coding Mus_musculus
ENSMUSG00000095824 Gm13697 predicted gene 13697 protein_coding Mus_musculus
ENSMUSG00000096337 Gm13694 predicted gene 13694 protein_coding Mus_musculus
ENSMUSG00000096484 Gm13696 predicted gene 13696 protein_coding Mus_musculus
ENSMUSG00000096729 Gm13695 predicted gene 13695 protein_coding Mus_musculus

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