C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CWC22 spliceosome-associated protein homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027014 Cwc22 10090 - 2:77881159-77946375 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065889 Cwc22-001 77895653-77946375 protein_coding
  ENSMUST00000111818 Cwc22-005 77895768-77946353 protein_coding
  ENSMUST00000111819 Cwc22-007 77895766-77946183 protein_coding
  ENSMUST00000111821 Cwc22-201 77895653-77946353 protein_coding
  ENSMUST00000111824 Cwc22-012 77881159-77946180 protein_coding
  ENSMUST00000127289 Cwc22-006 77929287-77945938 protein_coding
  ENSMUST00000127351 Cwc22-002 77926043-77946183 processed_transcript
  ENSMUST00000128963 Cwc22-008 77929373-77946189 protein_coding
  ENSMUST00000137494 Cwc22-011 77895766-77924528 processed_transcript
  ENSMUST00000139842 Cwc22-004 77906269-77908167 processed_transcript
  ENSMUST00000144727 Cwc22-003 77916427-77946199 processed_transcript
  ENSMUST00000149012 Cwc22-010 77929429-77936669 processed_transcript
  ENSMUST00000156863 Cwc22-009 77930775-77936727 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065889ENSMUST00000111818ENSMUST00000111819ENSMUST00000111821ENSMUST00000111824ENSMUST00000127289ENSMUST00000127351ENSMUST00000128963ENSMUST00000137494ENSMUST00000144727
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065889 0.620±0.09 0.344±0.01 N/A N/A N/A 1.382±0.00 0.523±0.18 0.657±0.27 0.799±0.09 1.515±0.00 0.648±0.06 0.786±0.17 N/A N/A
ENSMUST00000111818 N/A 0.155±0.00 N/A N/A 0.298±0.00 1.359±0.00 N/A 0.245±0.00 1.341±0.90 0.759±0.00 1.139±0.00 0.699±0.08 N/A 0.446±0.00
ENSMUST00000111819 0.804±0.19 N/A 4.122±0.46 3.356±0.10 0.668±0.22 0.975±0.07 0.497±0.19 0.654±0.19 3.387±2.59 0.582±0.08 1.881±0.23 3.080±2.91 28.170±37.91 0.768±0.06
ENSMUST00000111821 0.919±0.01 0.300±0.04 2.467±0.52 1.959±0.10 0.634±0.18 0.655±0.17 N/A 0.580±0.11 3.156±1.42 1.232±0.42 N/A 0.598±0.19 3.210±0.70 0.510±0.33
ENSMUST00000111824 0.744±0.10 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.636±0.00 N/A 0.385±0.00
ENSMUST00000127289 N/A 0.367±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.562±0.00 N/A N/A
ENSMUST00000127351 N/A N/A N/A N/A N/A 0.446±0.00 N/A N/A N/A N/A N/A 0.512±0.14 N/A N/A
ENSMUST00000128963 N/A N/A N/A N/A N/A N/A N/A N/A 1.106±0.00 N/A N/A 1.865±1.03 20.808±0.00 1.287±0.00
ENSMUST00000137494 N/A 0.635±0.28 2.483±0.49 17.151±21.10 0.514±0.12 N/A N/A 0.753±0.09 2.013±1.15 1.024±0.00 0.809±0.19 4.218±5.82 18.975±16.85 3.984±4.91
ENSMUST00000144727 N/A N/A N/A 24.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 99.410±24.96 8.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004C1 CIL_0004C1_0003 CGP 2:77410634-77946375
CIL_0004C2 CIL_0004C2_0003 CGP 2:77881159-78921293

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 ISS RNA binding
GO:0005681 ISS spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014008 cwc22 CWC22 spliceosome-associated protein homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000163510 CWC22 CWC22 spliceosome-associated protein protein_coding Homo_sapiens

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