C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CWC22 spliceosome-associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000410053 CWC22-001 ENSG00000163510 9606 - 2:179944876-180007053 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000410053
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000410053 0.559±0.00 2.778±0.00 4.132±0.00 1.855±1.25 1.558±0.00 2.608±0.00 0.717±0.00 0.594±0.00 7.758±2.25 3.705±0.00 3.821±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004C1 CIL_0004C1_0002 CGP 2:179441982-180007113
CIL_0004C2 CIL_0004C2_0002 CGP 2:179944876-181076585

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003723 IEA:IDA RNA binding
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005681 IDA spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0016607 IDA nuclear speck
GO:0048024 IC regulation of mRNA splicing, via spliceosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111819 Cwc22-007 protein_coding Mus_musculus 0 2466
ENSMUST00000111818 Cwc22-005 protein_coding Mus_musculus 0 2459
ENSMUST00000111821 Cwc22-201 protein_coding Mus_musculus 0 2392
ENSMUST00000065889 Cwc22-001 protein_coding Mus_musculus 0 2392
ENSMUST00000178960 Gm13693-001 protein_coding Mus_musculus 0 2220
ENSMUST00000179192 Gm13698-001 protein_coding Mus_musculus 0 2220
ENSMUST00000099947 Gm13691-001 protein_coding Mus_musculus 0 2220
ENSMUST00000099948 Gm13697-001 protein_coding Mus_musculus 0 2220
ENSMUST00000178533 Gm13694-001 protein_coding Mus_musculus 0 2220
ENSMUST00000180347 Gm13696-001 protein_coding Mus_musculus 0 2220
ENSMUST00000099951 Gm13695-001 protein_coding Mus_musculus 0 2215
ENSMUST00000111824 Cwc22-012 protein_coding Mus_musculus 0 2194
ENSMUST00000038472 Hdx-002 protein_coding Mus_musculus 0 1659
ENSMUST00000113422 Hdx-001 protein_coding Mus_musculus 0 1659
ENSMUST00000119729 Gm7340-001 processed_pseudogene Mus_musculus 0 1633
ENSMUST00000121068 Gm9218-001 processed_pseudogene Mus_musculus 0 1369
ENSMUST00000144727 Cwc22-003 processed_transcript Mus_musculus 0 1304
ENSMUST00000137494 Cwc22-011 processed_transcript Mus_musculus 0 902
ENSMUST00000179448 Gm13693-201 protein_coding Mus_musculus 0 787
ENSMUST00000178325 Gm13698-201 protein_coding Mus_musculus 0 787
ENSMUST00000179552 Gm13697-201 protein_coding Mus_musculus 0 787
ENSMUST00000178655 Gm13694-201 protein_coding Mus_musculus 0 787
ENSMUST00000179311 Gm13696-201 protein_coding Mus_musculus 0 787
ENSMUST00000179504 Gm13695-201 protein_coding Mus_musculus 0 782
ENSMUST00000139842 Cwc22-004 processed_transcript Mus_musculus 0 316

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