C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat and FYVE domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163625 WDFY3 9606 - 4:84669610-84966391 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295888 WDFY3-001 84669610-84966391 protein_coding
  ENST00000425179 WDFY3-002 84672291-84682948 retained_intron
  ENST00000426414 WDFY3-003 84808866-84896941 retained_intron
  ENST00000502713 WDFY3-006 84860564-84966391 protein_coding
  ENST00000504839 WDFY3-010 84735106-84739330 retained_intron
  ENST00000504990 WDFY3-007 84849673-84860563 retained_intron
  ENST00000505923 WDFY3-011 84801782-84810107 processed_transcript
  ENST00000509172 WDFY3-005 84860412-84966350 protein_coding
  ENST00000509825 WDFY3-009 84751248-84755399 retained_intron
  ENST00000512267 WDFY3-008 84801790-84804174 processed_transcript
  ENST00000514071 WDFY3-004 84841192-84850015 protein_coding
  ENST00000514711 WDFY3-013 84691726-84733462 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000295888ENST00000425179ENST00000426414ENST00000514711
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000295888 1.110±0.00 0.263±0.00 4.082±0.00 2.394±1.32 1.053±0.45 1.617±0.00 2.126±0.47 0.761±0.00 N/A N/A 0.573±0.23 0.503±0.15 0.752±0.00
ENST00000425179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.323±0.00 4.188±0.00 N/A
ENST00000426414 N/A N/A N/A N/A N/A N/A N/A 2.202±0.00 N/A N/A N/A N/A N/A
ENST00000514711 N/A N/A 14.726±0.00 7.738±0.00 5.706±0.00 4.645±0.00 N/A 3.771±0.00 7.994±0.00 2.860±0.00 7.933±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052U CIL_00052U_0002 CGP 4:84582979-84966391
CIL_0006J5 CIL_0006J5_0001 CGP 4:84669610-86002670

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003831 IEA beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005545 IDA 1-phosphatidylinositol binding
GO:0005635 IDA nuclear envelope
GO:0005737 IDA cytoplasm
GO:0005776 IMP autophagic vacuole
GO:0016234 IDA inclusion body
GO:0016239 IMP positive regulation of macroautophagy
GO:0016605 IDA PML body
GO:0019898 IDA extrinsic component of membrane
GO:0034274 IDA Atg12-Atg5-Atg16 complex
GO:0035973 IMP aggrephagy
GO:0046872 IEA metal ion binding
GO:0097635 IEA extrinsic component of autophagic vacuole membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078890 wdfy3 WD repeat and FYVE domain containing 3 protein_coding Danio_rerio
ENSMUSG00000043940 Wdfy3 WD repeat and FYVE domain containing 3 protein_coding Mus_musculus

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