C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat and FYVE domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295888 WDFY3-001 ENSG00000163625 9606 - 4:84669610-84966391 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyOvaryPlacentaTestisENST00000295888
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Ovary Placenta Testis
ENST00000295888 1.110±0.00 0.263±0.00 4.082±0.00 2.394±1.32 1.053±0.45 1.617±0.00 2.126±0.47 0.761±0.00 0.573±0.23 0.503±0.15 0.752±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052U CIL_00052U_0002 CGP 4:84582979-84966391
CIL_0006J5 CIL_0006J5_0001 CGP 4:84669610-86002670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003831 IEA beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005545 IDA 1-phosphatidylinositol binding
GO:0005635 IDA nuclear envelope
GO:0005737 IDA cytoplasm
GO:0005776 IMP autophagic vacuole
GO:0016234 IDA inclusion body
GO:0016239 IMP positive regulation of macroautophagy
GO:0016605 IDA PML body
GO:0019898 IDA extrinsic component of membrane
GO:0034274 IDA Atg12-Atg5-Atg16 complex
GO:0035973 IMP aggrephagy
GO:0046872 IEA metal ion binding
GO:0097635 IEA extrinsic component of autophagic vacuole membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174598 Wdfy3-004 protein_coding Mus_musculus 0 11590
ENSMUST00000053177 Wdfy3-001 protein_coding Mus_musculus 0 7936
ENSMUST00000174698 Wdfy3-002 protein_coding Mus_musculus 0 2889
ENSMUST00000173955 Wdfy3-003 retained_intron Mus_musculus 0 1899
ENSMUST00000173385 Wdfy3-008 protein_coding Mus_musculus 0 1182
ENSMUST00000172927 Wdfy3-006 nonsense_mediated_decay Mus_musculus 0 654
ENSMUST00000174103 Wdfy3-005 protein_coding Mus_musculus 0 619
ENSMUST00000172512 Wdfy3-007 processed_transcript Mus_musculus 0 370

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