C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat and FYVE domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043940 Wdfy3 10090 - 5:101832956-102069921 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053177 Wdfy3-001 101832956-102069921 protein_coding
  ENSMUST00000172512 Wdfy3-007 101935081-101937676 processed_transcript
  ENSMUST00000172927 Wdfy3-006 101922817-101930853 nonsense_mediated_decay
  ENSMUST00000173385 Wdfy3-008 101884051-101895050 protein_coding
  ENSMUST00000173955 Wdfy3-003 101834937-101851513 retained_intron
  ENSMUST00000174103 Wdfy3-005 101833323-101943954 protein_coding
  ENSMUST00000174598 Wdfy3-004 101836158-101981558 protein_coding
  ENSMUST00000174698 Wdfy3-002 101929306-102069921 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000053177ENSMUST00000173955ENSMUST00000174598
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000053177 1.600±0.68 1.399±0.04 8.026±2.42 1.243±0.41 2.247±1.27 0.643±0.00 2.524±0.78 0.842±0.10 2.262±0.00 2.452±0.71 2.634±1.21 1.278±0.23
ENSMUST00000173955 N/A N/A N/A N/A 3.848±0.33 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174598 N/A 1.241±0.00 3.233±0.00 N/A N/A N/A N/A N/A N/A 3.019±0.00 4.157±0.00 1.202±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052U CIL_00052U_0003 CGP 5:101765130-102069921
CIL_0006J5 CIL_0006J5_0002 CGP 5:101832956-102897936

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003831 IDA beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005545 IEA 1-phosphatidylinositol binding
GO:0005635 ISA nuclear envelope
GO:0005737 ISA cytoplasm
GO:0005776 ISA autophagic vacuole
GO:0008152 IDA metabolic process
GO:0016234 ISS inclusion body
GO:0016239 ISS positive regulation of macroautophagy
GO:0016605 ISS PML body
GO:0019898 ISA extrinsic component of membrane
GO:0034274 IEA Atg12-Atg5-Atg16 complex
GO:0035973 ISS aggrephagy
GO:0046872 IEA metal ion binding
GO:0097635 IDA extrinsic component of autophagic vacuole membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078890 wdfy3 WD repeat and FYVE domain containing 3 protein_coding Danio_rerio
ENSG00000163625 WDFY3 WD repeat and FYVE domain containing 3 protein_coding Homo_sapiens

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