C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptoporin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163630 SYNPR 9606 + 3:63228315-63616921 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295894 SYNPR-004 63443077-63616921 protein_coding
  ENST00000450542 SYNPR-002 63278318-63615536 protein_coding
  ENST00000460142 SYNPR-010 63278666-63556741 processed_transcript
  ENST00000460711 SYNPR-007 63443333-63616920 protein_coding
  ENST00000465156 SYNPR-015 63443337-63615595 protein_coding
  ENST00000467934 SYNPR-012 63443077-63556722 processed_transcript
  ENST00000468110 SYNPR-003 63278328-63615920 nonsense_mediated_decay
  ENST00000472899 SYNPR-013 63443310-63556741 protein_coding
  ENST00000478300 SYNPR-001 63278123-63616921 protein_coding
  ENST00000478456 SYNPR-008 63228315-63556696 processed_transcript
  ENST00000478744 SYNPR-014 63443333-63610513 processed_transcript
  ENST00000479198 SYNPR-006 63443328-63616921 protein_coding
  ENST00000493532 SYNPR-011 63351429-63609316 processed_transcript
  ENST00000496889 SYNPR-009 63278651-63556649 processed_transcript
  ENST00000498449 SYNPR-005 63443114-63615846 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000295894ENST00000450542ENST00000460142ENST00000460711ENST00000467934ENST00000468110ENST00000478300ENST00000478456ENST00000479198ENST00000498449
Transcript ID Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000295894 5.621±0.94 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450542 N/A N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A
ENST00000460142 N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A
ENST00000460711 5.283±0.00 0.014±0.00 N/A N/A N/A N/A 0.017±0.01 N/A N/A
ENST00000467934 N/A N/A N/A N/A N/A N/A N/A 0.096±0.00 N/A
ENST00000468110 N/A N/A N/A 0.074±0.00 N/A N/A N/A 0.056±0.00 N/A
ENST00000478300 8.889±3.37 N/A 0.041±0.00 N/A N/A 0.016±0.00 0.004±0.00 0.058±0.04 0.012±0.00
ENST00000478456 N/A N/A N/A 0.184±0.00 N/A N/A N/A N/A N/A
ENST00000479198 N/A 0.034±0.00 N/A N/A N/A N/A N/A 0.057±0.00 N/A
ENST00000498449 N/A N/A 0.155±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078O CIL_00078O_0001 CGP 3:63228315-63679020

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0008021 IEA synaptic vesicle
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030285 IBA integral component of synaptic vesicle membrane
GO:0043005 IEA neuron projection

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037587 SYNPR (1 of 2) synaptoporin protein_coding Danio_rerio
ENSDARG00000044278 synpr synaptoporin protein_coding Danio_rerio
ENSMUSG00000056296 Synpr synaptoporin protein_coding Mus_musculus

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