C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptoporin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478300 SYNPR-001 ENSG00000163630 9606 + 3:63278123-63616921 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLungOvaryPlacentaTestisENST00000478300
Transcript ID Brain Colon Lung Ovary Placenta Testis
ENST00000478300 8.889±3.37 0.041±0.00 0.016±0.00 0.004±0.00 0.058±0.04 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078O CIL_00078O_0001 CGP 3:63228315-63679020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0030285 IBA integral component of synaptic vesicle membrane
GO:0043005 IEA neuron projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070323 Synpr-001 protein_coding Mus_musculus 0 1657
ENSMUST00000112656 Synpr-002 protein_coding Mus_musculus 0 1524
ENSMUST00000147677 Synpr-004 retained_intron Mus_musculus 0 676

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