C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ataxin 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163635 ATXN7 9606 + 3:63864557-64003462 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295900 ATXN7-001 63864560-64003462 protein_coding
  ENST00000466529 ATXN7-007 63982187-63988474 retained_intron
  ENST00000472569 ATXN7-009 63982891-63988463 retained_intron
  ENST00000474112 ATXN7-003 63864557-63996636 retained_intron
  ENST00000474513 ATXN7-002 63864557-63912675 protein_coding
  ENST00000475897 ATXN7-005 63967807-63980663 retained_intron
  ENST00000477516 ATXN7-008 63990510-63995877 retained_intron
  ENST00000484332 ATXN7-006 63967744-63999796 protein_coding
  ENST00000484668 ATXN7-010 63988199-63990985 retained_intron
  ENST00000487717 ATXN7-004 63911929-64000207 protein_coding
  ENST00000488239 ATXN7-011 63968369-63982423 processed_transcript
  ENST00000522345 ATXN7-013 63996310-63999554 protein_coding
  ENST00000538065 ATXN7-201 63898399-64003453 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295900ENST00000466529ENST00000474112ENST00000487717ENST00000538065
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.630±0.18 N/A 0.889±0.00
ENST00000466529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.601±0.00
ENST00000474112 N/A N/A N/A 0.988±0.00 N/A N/A N/A N/A N/A N/A N/A 0.765±0.00 0.970±0.00 2.322±0.00
ENST00000487717 N/A N/A 2.263±0.00 N/A N/A N/A 1.073±0.00 2.348±0.00 1.406±0.00 1.449±0.00 N/A 2.539±0.00 0.766±0.02 N/A
ENST00000538065 2.973±0.00 1.758±0.00 N/A 1.020±0.55 1.850±0.00 0.978±0.00 0.914±0.40 1.539±0.00 0.463±0.04 1.432±0.00 1.870±0.00 1.453±0.85 0.304±0.07 3.117±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ES CIL_0008ES_0001 VISTA 3:63387152-63989110
CIL_00078B CIL_00078B_0001 CGP 3:63833870-64003462
CIL_00079H CIL_00079H_0001 CGP 3:63864557-64024010

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006997 TAS nucleus organization
GO:0007601 TAS visual perception
GO:0008219 IEA cell death
GO:0015630 IDA microtubule cytoskeleton
GO:0016578 IDA histone deubiquitination
GO:0042326 IEA negative regulation of phosphorylation
GO:0043569 IEA negative regulation of insulin-like growth factor receptor signaling pathway
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074804 ataxin 7 protein_coding Danio_rerio
ENSMUSG00000021738 Atxn7 ataxin 7 protein_coding Mus_musculus

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