C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008ES_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1387 VISTA 9606 3:63387152-63989110
GeneTranscriptPositionBiotype
ENSG00000163630 (SYNPR)
synaptoporin 		ENST00000295894 (SYNPR-004) 63443077-63616921 protein_coding
ENST00000450542 (SYNPR-002) 63278318-63615536 protein_coding
ENST00000460142 (SYNPR-010) 63278666-63556741 processed_transcript
ENST00000460711 (SYNPR-007) 63443333-63616920 protein_coding
ENST00000465156 (SYNPR-015) 63443337-63615595 protein_coding
ENST00000467934 (SYNPR-012) 63443077-63556722 processed_transcript
ENST00000468110 (SYNPR-003) 63278328-63615920 nonsense_mediated_decay
ENST00000472899 (SYNPR-013) 63443310-63556741 protein_coding
ENST00000478300 (SYNPR-001) 63278123-63616921 protein_coding
ENST00000478456 (SYNPR-008) 63228315-63556696 processed_transcript
ENST00000478744 (SYNPR-014) 63443333-63610513 processed_transcript
ENST00000479198 (SYNPR-006) 63443328-63616921 protein_coding
ENST00000493532 (SYNPR-011) 63351429-63609316 processed_transcript
ENST00000496889 (SYNPR-009) 63278651-63556649 processed_transcript
ENST00000498449 (SYNPR-005) 63443114-63615846 nonsense_mediated_decay
ENSG00000163632 (C3orf49)
chromosome 3 open reading frame 49 		ENST00000295896 (C3orf49-001) 63819362-63848636 protein_coding
ENST00000491896 (C3orf49-002) 63823500-63832106 retained_intron
ENST00000616659 (C3orf49-201) 63819472-63833637 protein_coding
ENSG00000163634 (THOC7)
THO complex 7 homolog (Drosophila) 		ENST00000295899 (THOC7-001) 63833870-63863903 protein_coding
ENST00000464327 (THOC7-004) 63837992-63863799 protein_coding
ENST00000469153 (THOC7-006) 63835165-63839773 nonsense_mediated_decay
ENST00000469584 (THOC7-002) 63833871-63863868 protein_coding
ENST00000473141 (THOC7-007) 63835154-63854742 processed_transcript
ENST00000487570 (THOC7-005) 63838101-63839779 retained_intron
ENST00000498422 (THOC7-003) 63835327-63863786 processed_transcript
ENSG00000163635 (ATXN7)
ataxin 7 		ENST00000295900 (ATXN7-001) 63864560-64003462 protein_coding
ENST00000466529 (ATXN7-007) 63982187-63988474 retained_intron
ENST00000472569 (ATXN7-009) 63982891-63988463 retained_intron
ENST00000474112 (ATXN7-003) 63864557-63996636 retained_intron
ENST00000474513 (ATXN7-002) 63864557-63912675 protein_coding
ENST00000475897 (ATXN7-005) 63967807-63980663 retained_intron
ENST00000477516 (ATXN7-008) 63990510-63995877 retained_intron
ENST00000484332 (ATXN7-006) 63967744-63999796 protein_coding
ENST00000484668 (ATXN7-010) 63988199-63990985 retained_intron
ENST00000487717 (ATXN7-004) 63911929-64000207 protein_coding
ENST00000488239 (ATXN7-011) 63968369-63982423 processed_transcript
ENST00000522345 (ATXN7-013) 63996310-63999554 protein_coding
ENST00000538065 (ATXN7-201) 63898399-64003453 protein_coding
ENSG00000188817 (SNTN)
sentan, cilia apical structure protein 		ENST00000343837 (SNTN-002) 63652668-63664721 protein_coding
ENST00000469440 (SNTN-003) 63652679-63664060 protein_coding
ENST00000496807 (SNTN-001) 63652698-63679020 protein_coding
ENSG00000224479 (AC136289.1)
 ENST00000430831 (AC136289.1-001) 63742293-63805093 transcribed_unprocessed_pseudogene
ENST00000436687 (AC136289.1-004) 63767067-63783099 processed_transcript
ENST00000437462 (AC136289.1-003) 63754126-63805093 processed_transcript
ENST00000443346 (AC136289.1-002) 63785986-63827445 processed_transcript
ENSG00000240549 (THOC7-AS1)
THOC7 antisense RNA 1 		ENST00000468961 (THOC7-AS1-001) 63860645-63861819 antisense
ENSG00000241359 (SYNPR-AS1)
SYNPR antisense RNA 1 		ENST00000488201 (SYNPR-AS1-001) 63423596-63550051 antisense
CIL_0008ES_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1387 VISTA 10090 14:13470324-14071435
GeneTranscriptPositionBiotype
ENSMUSG00000021738 (Atxn7)
ataxin 7 		ENSMUST00000022257 (Atxn7-201) 14012491-14107296 protein_coding
ENSMUSG00000044772 (Sntn)
sentan, cilia apical structure protein 		ENSMUST00000061045 (Sntn-001) 13670876-13683148 protein_coding
ENSMUSG00000053453 (Thoc7)
THO complex 7 homolog (Drosophila) 		ENSMUST00000065865 (Thoc7-201) 13949014-13961225 protein_coding
ENSMUSG00000056296 (Synpr)
synaptoporin 		ENSMUST00000070323 (Synpr-001) 13284780-13615459 protein_coding
ENSMUST00000112656 (Synpr-002) 13454057-13615459 protein_coding
ENSMUST00000145700 (Synpr-003) 13453984-13566712 retained_intron
ENSMUST00000147677 (Synpr-004) 13454071-13610502 retained_intron
ENSMUST00000153954 (Synpr-005) 13453958-13563045 protein_coding
ENSMUSG00000084902 (Gm281)
predicted gene 281 		ENSMUST00000144914 (Gm281-001) 13814949-13914478 protein_coding
ENSMUSG00000091818 (Rpl19-ps4)
ribosomal protein L19, pseudogene 4 		ENSMUST00000167150 (Rpl19-ps4-201) 13777814-13778440 processed_pseudogene
ENSMUSG00000098694 (Gm27506)
predicted gene, 27506 		ENSMUST00000184558 (Gm27506-201) 13778072-13778151 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163630 ENST00000295894 N/A N/A N/A 5.621±0.94 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450542 N/A N/A N/A N/A N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460142 N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A
ENST00000460711 N/A N/A N/A 5.283±0.00 0.014±0.00 N/A N/A N/A N/A N/A N/A 0.017±0.01 N/A N/A
ENST00000465156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.00 N/A
ENST00000468110 N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A N/A N/A N/A N/A 0.056±0.00 N/A
ENST00000472899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478300 N/A N/A N/A 8.889±3.37 N/A 0.041±0.00 N/A N/A N/A 0.016±0.00 N/A 0.004±0.00 0.058±0.04 0.012±0.00
ENST00000478456 N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000478744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479198 N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A
ENST00000493532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498449 N/A N/A N/A N/A N/A 0.155±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163632 ENST00000295896 N/A N/A N/A 0.118±0.00 N/A N/A N/A N/A N/A 0.034±0.00 N/A 0.027±0.01 N/A 0.061±0.00
ENST00000491896 0.017±0.00 0.184±0.00 0.072±0.00 0.865±0.19 0.183±0.04 0.131±0.00 0.126±0.00 0.205±0.00 0.129±0.07 0.470±0.00 N/A 0.042±0.00 N/A 0.211±0.03
ENST00000616659 N/A 0.089±0.00 N/A 0.243±0.00 0.021±0.00 N/A N/A 0.109±0.00 N/A N/A N/A N/A N/A 0.194±0.03
ENSG00000163634 ENST00000295899 10.844±0.00 19.224±0.00 N/A 21.544±2.30 13.596±2.38 13.088±4.59 13.820±7.00 11.556±8.70 10.056±4.39 14.455±6.35 11.608±6.42 16.465±6.80 18.504±2.66 17.926±3.46
ENST00000464327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.437±0.00 N/A N/A N/A
ENST00000469584 13.266±0.00 13.731±0.00 N/A 9.281±0.00 8.653±6.16 25.672±0.00 6.127±0.00 7.362±6.22 4.404±0.00 1.244±0.00 0.720±0.00 17.438±2.63 16.437±10.18 12.579±0.43
ENST00000473141 N/A N/A N/A N/A N/A 2.565±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498422 N/A N/A 2.489±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163635 ENST00000295900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.630±0.18 N/A 0.889±0.00
ENST00000466529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.601±0.00
ENST00000472569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474112 N/A N/A N/A 0.988±0.00 N/A N/A N/A N/A N/A N/A N/A 0.765±0.00 0.970±0.00 2.322±0.00
ENST00000474513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487717 N/A N/A 2.263±0.00 N/A N/A N/A 1.073±0.00 2.348±0.00 1.406±0.00 1.449±0.00 N/A 2.539±0.00 0.766±0.02 N/A
ENST00000488239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538065 2.973±0.00 1.758±0.00 N/A 1.020±0.55 1.850±0.00 0.978±0.00 0.914±0.40 1.539±0.00 0.463±0.04 1.432±0.00 1.870±0.00 1.453±0.85 0.304±0.07 3.117±0.00
ENSG00000188817 ENST00000343837 N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A 6.123±0.19 N/A 5.876±5.82 0.061±0.00 0.502±0.42
ENST00000469440 N/A N/A N/A N/A N/A 0.207±0.02 N/A N/A N/A N/A N/A 0.069±0.00 0.056±0.01 N/A
ENST00000496807 0.021±0.00 0.042±0.00 N/A 0.022±0.01 0.003±0.00 0.008±0.00 0.006±0.00 0.009±0.00 0.005±0.00 N/A 0.016±0.00 N/A N/A N/A
ENSG00000224479 ENST00000430831 N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A
ENST00000436687 N/A N/A 0.280±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.087±0.00
ENST00000437462 N/A N/A N/A N/A 0.051±0.00 0.047±0.00 0.061±0.00 0.034±0.00 N/A 0.141±0.00 N/A N/A 0.060±0.00 0.079±0.00
ENST00000443346 0.046±0.00 0.629±0.00 N/A 1.833±0.25 0.377±0.11 0.199±0.06 N/A 0.423±0.20 N/A 0.465±0.00 N/A N/A 0.058±0.00 0.089±0.00
ENSG00000240549 ENST00000468961 0.123±0.00 0.350±0.00 0.215±0.00 0.053±0.00 0.254±0.00 0.060±0.02 0.076±0.03 0.279±0.00 0.803±0.00 N/A N/A 0.196±0.15 1.537±0.00 0.304±0.00
ENSG00000241359 ENST00000488201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A 0.047±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021738 ENSMUST00000022257 4.667±1.47 1.850±0.91 6.730±0.20 3.936±0.77 3.342±1.20 4.505±0.53 2.373±0.08 3.735±1.09 2.701±0.90 7.422±1.34 1.986±0.50 5.205±1.75 3.130±0.89 3.038±0.89
ENSMUSG00000044772 ENSMUST00000061045 N/A N/A N/A 0.041±0.00 N/A N/A 0.400±0.01 N/A N/A 4.787±1.18 N/A 3.932±1.98 0.029±0.00 N/A
ENSMUSG00000053453 ENSMUST00000065865 11.742±0.74 2.687±0.70 38.393±0.46 27.713±14.43 10.541±3.38 7.485±2.02 14.331±1.37 15.823±3.11 24.615±19.96 8.132±2.03 41.556±4.32 15.290±15.09 24.223±7.06 19.752±1.23
ENSMUSG00000056296 ENSMUST00000070323 0.434±0.02 1.643±0.28 0.104±0.02 3.490±3.35 0.112±0.00 0.113±0.06 0.039±0.00 N/A 0.005±0.00 N/A 0.012±0.00 0.191±0.13 0.016±0.01 0.048±0.01
ENSMUST00000112656 0.015±0.00 N/A 0.017±0.00 8.154±2.29 0.076±0.03 0.047±0.00 N/A 0.018±0.00 0.007±0.00 0.079±0.00 0.020±0.00 0.011±0.00 0.054±0.00 0.028±0.00
ENSMUST00000145700 N/A N/A N/A N/A N/A N/A N/A N/A 0.001±0.00 N/A N/A N/A N/A N/A
ENSMUST00000147677 N/A N/A N/A N/A 0.066±0.00 N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A 0.007±0.00
ENSMUST00000153954 N/A N/A N/A N/A 0.519±0.44 0.363±0.21 N/A N/A N/A N/A 0.020±0.00 1.021±0.47 N/A 0.159±0.09
ENSMUSG00000084902 ENSMUST00000144914 0.019±0.00 N/A N/A N/A N/A N/A 0.099±0.04 N/A N/A N/A N/A 0.182±0.10 0.006±0.00 0.015±0.01
ENSMUSG00000091818 ENSMUST00000167150 0.080±0.00 N/A 0.008±0.00 0.015±0.00 N/A N/A 0.083±0.00 0.154±0.00 0.024±0.01 0.087±0.00 N/A N/A N/A 0.071±0.00
ENSMUSG00000098694 ENSMUST00000184558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 355.338±0.00 N/A N/A

Loading