C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: OTU deubiquitinase 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164164 OTUD4 9606 - 4:145110838-145180161 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000447906 OTUD4-004 145137134-145180161 protein_coding
  ENST00000454497 OTUD4-001 145133649-145179680 protein_coding
  ENST00000455611 OTUD4-009 145110838-145179641 processed_transcript
  ENST00000504331 OTUD4-007 145170769-145171711 processed_transcript
  ENST00000504501 OTUD4-003 145159520-145179611 protein_coding
  ENST00000505976 OTUD4-005 145155813-145179928 processed_transcript
  ENST00000509517 OTUD4-006 145146094-145150895 retained_intron
  ENST00000509620 OTUD4-002 145159137-145178155 protein_coding
  ENST00000509985 OTUD4-008 145159520-145179633 processed_transcript
  ENST00000514973 OTUD4-010 145146374-145179680 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyOvaryTestisENST00000447906ENST00000454497
Transcript ID Bladder Brain Colon Kidney Ovary Testis
ENST00000447906 2.109±0.00 N/A 2.247±0.00 1.565±0.00 N/A 21.498±0.00
ENST00000454497 N/A 2.327±0.00 N/A N/A 3.670±0.87 5.192±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YN CIL_0008YN_0001 VISTA 4:144638849-145240129

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005575 ND cellular_component
GO:0006508 IEA proteolysis
GO:0044822 IDA poly(A) RNA binding
GO:0071108 IDA protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077810 otud4 OTU domain containing 4 protein_coding Danio_rerio
ENSMUSG00000036990 Otud4 OTU domain containing 4 protein_coding Mus_musculus

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