C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: OTU deubiquitinase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000454497 OTUD4-001 ENSG00000164164 9606 - 4:145133649-145179680 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryTestisENST00000454497
Transcript ID Brain Ovary Testis
ENST00000454497 2.327±0.00 3.670±0.87 5.192±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YN CIL_0008YN_0001 VISTA 4:144638849-145240129

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005575 ND cellular_component
GO:0006508 IEA proteolysis
GO:0044822 IDA poly(A) RNA binding
GO:0071108 IDA protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173286 Otud4-002 protein_coding Mus_musculus 0 4933
ENSMUST00000173078 Otud4-001 protein_coding Mus_musculus 0 4926
ENSMUST00000172614 Otud4-006 protein_coding Mus_musculus 0 745
ENSMUST00000173868 Otud4-004 retained_intron Mus_musculus 0 601
ENSMUST00000173300 Otud4-003 retained_intron Mus_musculus 0 418

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