C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: OTU domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036990 Otud4 10090 + 8:79639618-79677724 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000172614 Otud4-006 79666823-79671378 protein_coding
  ENSMUST00000173078 Otud4-001 79639618-79677724 protein_coding
  ENSMUST00000173286 Otud4-002 79639704-79677672 protein_coding
  ENSMUST00000173300 Otud4-003 79651330-79659220 retained_intron
  ENSMUST00000173868 Otud4-004 79651742-79661243 retained_intron
  ENSMUST00000174485 Otud4-005 79661084-79668489 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172614ENSMUST00000173078ENSMUST00000173286ENSMUST00000174485
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172614 11.592±0.00 N/A N/A N/A 11.686±2.09 N/A N/A N/A N/A N/A N/A 22.386±4.62 N/A 30.176±0.00
ENSMUST00000173078 5.327±2.79 7.937±3.56 6.825±0.71 4.367±1.18 5.363±1.55 6.381±2.77 3.040±1.01 2.854±0.81 3.403±1.70 6.282±1.81 4.010±1.29 11.760±5.36 9.625±1.42 6.227±1.83
ENSMUST00000173286 5.670±1.67 8.990±2.41 5.739±0.85 4.824±0.98 8.873±2.54 6.309±1.78 6.126±0.97 4.490±1.72 4.166±1.14 8.467±2.86 3.168±1.53 7.236±3.18 8.947±1.08 12.023±3.09
ENSMUST00000174485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 67.710±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YN CIL_0008YN_0002 VISTA 8:79537628-80138676
CIL_0006B8 CIL_0006B8_0002 CGP 8:79639618-79711740

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005575 ND cellular_component
GO:0006508 IEA proteolysis
GO:0044822 IEA poly(A) RNA binding
GO:0071108 ISS protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077810 otud4 OTU domain containing 4 protein_coding Danio_rerio
ENSG00000164164 OTUD4 OTU deubiquitinase 4 protein_coding Homo_sapiens

Loading