C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: OTU deubiquitinase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447906 OTUD4-004 ENSG00000164164 9606 - 4:145137134-145180161 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonKidneyTestisENST00000447906
Transcript ID Bladder Colon Kidney Testis
ENST00000447906 2.109±0.00 2.247±0.00 1.565±0.00 21.498±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YN CIL_0008YN_0001 VISTA 4:144638849-145240129

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005575 ND cellular_component
GO:0006508 IEA proteolysis
GO:0044822 IDA poly(A) RNA binding
GO:0071108 IDA protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173286 Otud4-002 protein_coding Mus_musculus 0 4063
ENSMUST00000173078 Otud4-001 protein_coding Mus_musculus 0 4056
ENSMUST00000172614 Otud4-006 protein_coding Mus_musculus 0 745
ENSMUST00000173868 Otud4-004 retained_intron Mus_musculus 0 601
ENSMUST00000173300 Otud4-003 retained_intron Mus_musculus 0 418

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