C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: EGF-like, fibronectin type III and laminin G domains
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354891 EGFLAM-004 ENSG00000164318 9606 + 5:38258409-38464549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354891
Transcript ID Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354891 2.229±0.00 0.173±0.00 0.378±0.00 0.333±0.23 2.283±0.00 0.867±0.00 6.485±1.51 2.567±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005539 IEA glycosaminoglycan binding
GO:0005604 IEA basement membrane
GO:0005614 IEA interstitial matrix
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0019800 IEA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0030054 IEA cell junction
GO:0030198 IEA extracellular matrix organization
GO:0031012 IEA extracellular matrix
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000096494 Egflam-001 protein_coding Mus_musculus 0 3308
ENSMUST00000160207 Egflam-003 nonsense_mediated_decay Mus_musculus 0 3249
ENSMUST00000058593 Egflam-002 protein_coding Mus_musculus 0 3169
ENSMUST00000160273 Egflam-004 retained_intron Mus_musculus 0 2270
ENSMUST00000162105 Egflam-006 processed_transcript Mus_musculus 0 195

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