C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transformer 2 alpha homolog (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164548 TRA2A 9606 - 7:23504780-23532041 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297071 TRA2A-001 23504780-23532041 protein_coding
  ENST00000392502 TRA2A-201 23504784-23532041 protein_coding
  ENST00000448549 TRA2A-004 23516395-23532023 nonsense_mediated_decay
  ENST00000474586 TRA2A-005 23507421-23531680 processed_transcript
  ENST00000475970 TRA2A-009 23505316-23505885 retained_intron
  ENST00000482395 TRA2A-006 23505320-23506480 retained_intron
  ENST00000486934 TRA2A-007 23505468-23506208 retained_intron
  ENST00000490942 TRA2A-003 23513025-23531980 processed_transcript
  ENST00000494255 TRA2A-002 23507157-23531981 retained_intron
  ENST00000497730 TRA2A-008 23505249-23506206 processed_transcript
  ENST00000538367 TRA2A-202 23504784-23532041 protein_coding
  ENST00000621813 TRA2A-203 23504784-23532041 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297071ENST00000474586ENST00000490942ENST00000494255ENST00000538367ENST00000621813
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297071 9.179±0.00 12.879±0.00 2.039±0.00 7.419±0.00 11.068±0.00 11.476±0.00 6.515±0.00 9.323±0.00 4.538±0.31 8.701±0.00 4.282±0.83 13.816±8.10 12.105±1.83 16.289±3.61
ENST00000474586 N/A N/A 8.643±0.00 4.908±0.00 12.796±0.00 11.481±0.00 2.104±0.00 3.776±0.00 8.575±0.00 N/A 3.929±0.50 10.690±6.43 23.845±0.00 27.186±0.00
ENST00000490942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.183±0.00 10.060±0.00
ENST00000494255 N/A 6.863±0.00 1.818±0.00 1.217±0.00 N/A N/A N/A N/A N/A 3.898±0.00 N/A 11.512±0.00 4.692±0.00 18.406±0.00
ENST00000538367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.444±0.00 9.416±0.00 6.901±0.00
ENST00000621813 N/A N/A N/A N/A N/A N/A N/A 4.696±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022J CIL_00022J_0001 CGP 7:23310209-23532041
CIL_0002CW CIL_0002CW_0001 CGP 7:23504780-23644708

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007863 tra2a transformer-2 alpha protein_coding Danio_rerio
ENSMUSG00000029817 Tra2a transformer 2 alpha homolog (Drosophila) protein_coding Mus_musculus

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