C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002CW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000164548-ENSG00000169193 CGP 9606 7:23504780-23644708
GeneTranscriptPositionBiotype
ENSG00000164548 (TRA2A)
transformer 2 alpha homolog (Drosophila) 		ENST00000297071 (TRA2A-001) 23504780-23532041 protein_coding
ENST00000392502 (TRA2A-201) 23504784-23532041 protein_coding
ENST00000448549 (TRA2A-004) 23516395-23532023 nonsense_mediated_decay
ENST00000474586 (TRA2A-005) 23507421-23531680 processed_transcript
ENST00000475970 (TRA2A-009) 23505316-23505885 retained_intron
ENST00000482395 (TRA2A-006) 23505320-23506480 retained_intron
ENST00000486934 (TRA2A-007) 23505468-23506208 retained_intron
ENST00000490942 (TRA2A-003) 23513025-23531980 processed_transcript
ENST00000494255 (TRA2A-002) 23507157-23531981 retained_intron
ENST00000497730 (TRA2A-008) 23505249-23506206 processed_transcript
ENST00000538367 (TRA2A-202) 23504784-23532041 protein_coding
ENST00000621813 (TRA2A-203) 23504784-23532041 protein_coding
ENSG00000169193 (CCDC126)
coiled-coil domain containing 126 		ENST00000307471 (CCDC126-001) 23597379-23644708 protein_coding
ENST00000409765 (CCDC126-003) 23597442-23644707 protein_coding
ENST00000410069 (CCDC126-002) 23598161-23643237 protein_coding
ENST00000448353 (CCDC126-004) 23597515-23643024 protein_coding
ENST00000472407 (CCDC126-008) 23597838-23642936 retained_intron
ENST00000484553 (CCDC126-005) 23597416-23602220 processed_transcript
ENST00000485233 (CCDC126-007) 23597723-23611508 retained_intron
ENST00000486109 (CCDC126-009) 23598292-23611549 processed_transcript
ENSG00000224785 (AC006026.9)
 ENST00000444025 (AC006026.9-001) 23562459-23564261 processed_pseudogene
ENSG00000227436 (FCF1P1)
FCF1 pseudogene 1 		ENST00000432690 (FCF1P1-001) 23619333-23622826 processed_pseudogene
ENSG00000232553 (AC006026.10)
 ENST00000416636 (AC006026.10-001) 23585062-23586355 processed_pseudogene
ENSG00000279448 (FKSG54)
 ENST00000623135 (FKSG54-201) 23638162-23638536 protein_coding
CIL_0002CW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029817-ENSMUSG00000050786 CGP 10090 6:49243921-49341582
GeneTranscriptPositionBiotype
ENSMUSG00000029817 (Tra2a)
transformer 2 alpha homolog (Drosophila) 		ENSMUST00000031841 (Tra2a-201) 49243921-49264052 protein_coding
ENSMUSG00000050786 (Ccdc126)
coiled-coil domain containing 126 		ENSMUST00000055559 (Ccdc126-001) 49319274-49341582 protein_coding
ENSMUST00000114491 (Ccdc126-002) 49319307-49341578 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CW_0001ENSG00000164548ENST00000297071ENST00000392502ENST00000448549ENST00000474586ENST00000475970ENST00000482395ENST00000486934ENST00000490942ENST00000494255ENST00000497730ENST00000538367ENST00000621813ENSG00000169193ENST00000307471ENST00000409765ENST00000410069ENST00000448353ENST00000472407ENST00000484553ENST00000485233ENST00000486109ENSG00000224785ENST00000444025ENSG00000227436ENST00000432690ENSG00000232553ENST00000416636ENSG00000279448ENST00000623135CIL_0002CW_0002ENSMUSG00000029817ENSMUST00000031841ENSMUSG00000050786ENSMUST00000055559ENSMUST00000114491
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CW_0001ENSG00000164548ENST00000297071ENST00000474586ENST00000490942ENST00000494255ENST00000538367ENST00000621813ENSG00000169193ENST00000307471ENST00000409765ENST00000410069ENST00000448353ENST00000484553ENSG00000224785ENST00000444025ENSG00000227436ENST00000432690ENSG00000232553ENST00000416636ENSG00000279448ENST00000623135CIL_0002CW_0002ENSMUSG00000029817ENSMUST00000031841ENSMUSG00000050786ENSMUST00000055559ENSMUST00000114491
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164548 ENST00000297071 9.179±0.00 12.879±0.00 2.039±0.00 7.419±0.00 11.068±0.00 11.476±0.00 6.515±0.00 9.323±0.00 4.538±0.31 8.701±0.00 4.282±0.83 13.816±8.10 12.105±1.83 16.289±3.61
ENST00000392502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474586 N/A N/A 8.643±0.00 4.908±0.00 12.796±0.00 11.481±0.00 2.104±0.00 3.776±0.00 8.575±0.00 N/A 3.929±0.50 10.690±6.43 23.845±0.00 27.186±0.00
ENST00000475970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.183±0.00 10.060±0.00
ENST00000494255 N/A 6.863±0.00 1.818±0.00 1.217±0.00 N/A N/A N/A N/A N/A 3.898±0.00 N/A 11.512±0.00 4.692±0.00 18.406±0.00
ENST00000497730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.444±0.00 9.416±0.00 6.901±0.00
ENST00000621813 N/A N/A N/A N/A N/A N/A N/A 4.696±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000169193 ENST00000307471 2.033±0.00 1.180±0.00 0.536±0.00 2.711±1.29 1.735±0.23 0.736±0.11 1.125±0.02 1.734±0.99 1.668±1.10 2.162±1.09 1.336±0.00 1.195±0.43 0.514±0.16 2.796±0.62
ENST00000409765 0.389±0.00 N/A N/A 0.737±0.00 0.432±0.02 0.842±0.00 0.586±0.00 2.171±0.00 0.705±0.00 0.971±0.00 0.295±0.00 0.783±0.40 0.815±0.00 1.198±0.00
ENST00000410069 N/A N/A 0.381±0.00 N/A N/A 0.696±0.02 N/A N/A N/A N/A N/A 1.625±0.00 0.970±0.00 10.635±1.63
ENST00000448353 N/A N/A N/A N/A N/A 0.734±0.00 0.667±0.00 N/A N/A 2.835±0.00 N/A 0.870±0.00 N/A 18.843±0.00
ENST00000472407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484553 N/A N/A 0.830±0.00 N/A N/A N/A N/A N/A N/A N/A 4.445±0.00 N/A N/A N/A
ENST00000485233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224785 ENST00000444025 N/A 0.005±0.00 N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A 0.034±0.00 N/A N/A 0.119±0.00
ENSG00000227436 ENST00000432690 N/A 0.126±0.00 N/A 0.021±0.00 0.061±0.00 N/A 0.116±0.00 0.103±0.00 N/A N/A N/A 0.068±0.03 0.039±0.00 0.066±0.05
ENSG00000232553 ENST00000416636 N/A 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A 16.503±14.74
ENSG00000279448 ENST00000623135 0.090±0.00 0.093±0.00 0.229±0.00 0.051±0.00 N/A 0.044±0.00 0.042±0.00 N/A N/A 0.204±0.00 N/A 0.249±0.07 N/A 0.263±0.22
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029817 ENSMUST00000031841 18.653±5.88 10.988±2.89 36.568±11.45 55.278±27.05 13.150±4.23 14.446±3.69 9.363±1.03 9.895±2.67 27.832±21.95 18.863±4.18 6.957±1.64 27.774±9.06 44.413±16.98 14.212±4.91
ENSMUSG00000050786 ENSMUST00000055559 2.841±0.70 6.231±0.62 4.175±0.73 1.952±0.30 2.475±0.64 1.568±0.28 1.571±0.25 3.328±0.36 1.167±0.38 5.758±0.59 0.504±0.09 4.632±0.91 5.182±2.09 0.988±0.49
ENSMUST00000114491 N/A N/A N/A N/A N/A N/A N/A N/A 0.162±0.00 N/A N/A N/A N/A N/A

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