C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sp8 transcription factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164651 SP8 9606 - 7:20782283-20786886 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361443 SP8-002 20784287-20786886 protein_coding
  ENST00000418710 SP8-001 20784287-20786886 protein_coding
  ENST00000617581 SP8-201 20782283-20786886 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLungPlacentaTestisENST00000361443ENST00000418710ENST00000617581
Transcript ID Brain Colon Lung Placenta Testis
ENST00000361443 N/A N/A N/A 0.145±0.00 N/A
ENST00000418710 N/A 0.215±0.00 0.032±0.00 N/A N/A
ENST00000617581 0.317±0.00 N/A N/A 0.059±0.03 0.156±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UH CIL_0007UH_0001 VISTA 7:20489771-21090788
CIL_0007YM CIL_0007YM_0001 VISTA 7:20493009-21094283
CIL_0007Z1 CIL_0007Z1_0001 VISTA 7:20499224-21100776
CIL_0007QC CIL_0007QC_0001 VISTA 7:20658049-21259483
CIL_0008NJ CIL_0008NJ_0001 VISTA 7:20663661-21265131
CIL_0008EN CIL_0008EN_0001 VISTA 7:20679932-21281581
CIL_0008JT CIL_0008JT_0001 VISTA 7:20741182-21342467
CIL_0007T9 CIL_0007T9_0001 VISTA 7:20744723-21345841

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009953 IEA dorsal/ventral pattern formation
GO:0009954 IEA proximal/distal pattern formation
GO:0030326 IEA embryonic limb morphogenesis
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011870 sp8a sp8 transcription factor a protein_coding Danio_rerio
ENSDARG00000056666 sp8b sp8 transcription factor b protein_coding Danio_rerio
ENSMUSG00000048562 Sp8 trans-acting transcription factor 8 protein_coding Mus_musculus

Loading