C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007Z1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1019 VISTA 9606 7:20499224-21100776
GeneTranscriptPositionBiotype
ENSG00000004846 (ABCB5)
ATP-binding cassette, sub-family B (MDR/TAP), member 5 		ENST00000258738 (ABCB5-001) 20647422-20755624 protein_coding
ENST00000404938 (ABCB5-004) 20615207-20757009 protein_coding
ENST00000406935 (ABCB5-002) 20647343-20667323 protein_coding
ENST00000441315 (ABCB5-007) 20723094-20777038 nonsense_mediated_decay
ENST00000443026 (ABCB5-003) 20647343-20660394 protein_coding
ENST00000477094 (ABCB5-006) 20647330-20651696 processed_transcript
ENSG00000164651 (SP8)
Sp8 transcription factor 		ENST00000361443 (SP8-002) 20784287-20786886 protein_coding
ENST00000418710 (SP8-001) 20784287-20786886 protein_coding
ENST00000617581 (SP8-201) 20782283-20786886 protein_coding
ENSG00000179460 (EEF1A1P27)
eukaryotic translation elongation factor 1 alpha 1 pseudogene 27 		ENST00000429983 (EEF1A1P27-001) 20582072-20583206 processed_pseudogene
ENSG00000219451 (RPL23P8)
ribosomal protein L23 pseudogene 8 		ENST00000405810 (RPL23P8-001) 20827326-20827753 processed_pseudogene
ENSG00000223866 (AC002486.3)
 ENST00000435098 (AC002486.3-001) 20641558-20641948 processed_pseudogene
ENSG00000232790 (LINC01162)
long intergenic non-protein coding RNA 1162 		ENST00000447262 (LINC01162-001) 20835431-21023148 lincRNA
ENSG00000234839 (RPS26P30)
ribosomal protein S26 pseudogene 30 		ENST00000443431 (RPS26P30-001) 20843627-20843961 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0007Z1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1019 VISTA 10090 12:118534480-119136076
GeneTranscriptPositionBiotype
ENSMUSG00000048562 (Sp8)
trans-acting transcription factor 8 		ENSMUST00000063918 (Sp8-201) 118846329-118852578 protein_coding
ENSMUSG00000072791 (Abcb5)
ATP-binding cassette, sub-family B (MDR/TAP), member 5 		ENSMUST00000035515 (Abcb5-001) 118867824-118966421 protein_coding
ENSMUST00000100982 (Abcb5-002) 118886618-118924580 processed_transcript
ENSMUST00000177311 (Abcb5-003) 118886145-118890759 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007Z1_0001ENSG00000004846ENST00000258738ENST00000404938ENST00000406935ENST00000441315ENST00000443026ENST00000477094ENSG00000164651ENST00000361443ENST00000418710ENST00000617581ENSG00000179460ENST00000429983ENSG00000219451ENST00000405810ENSG00000223866ENST00000435098ENSG00000232790ENST00000447262ENSG00000234839ENST00000443431CIL_0007Z1_0002ENSMUSG00000048562ENSMUST00000063918ENSMUSG00000072791ENSMUST00000035515ENSMUST00000100982ENSMUST00000177311
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007Z1_0001ENSG00000004846ENST00000258738ENST00000404938ENST00000406935ENST00000441315ENST00000443026ENST00000477094ENSG00000164651ENST00000361443ENST00000418710ENST00000617581ENSG00000179460ENST00000429983ENSG00000219451ENST00000405810ENSG00000223866ENST00000435098ENSG00000232790ENST00000447262ENSG00000234839ENST00000443431CIL_0007Z1_0002ENSMUSG00000048562ENSMUST00000063918ENSMUSG00000072791ENSMUST00000035515ENSMUST00000100982ENSMUST00000177311
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004846 ENST00000258738 0.287±0.00 N/A N/A N/A N/A 0.124±0.04 N/A N/A N/A N/A N/A N/A 0.026±0.00 0.094±0.00
ENST00000404938 N/A 0.031±0.00 N/A 0.017±0.00 0.081±0.00 N/A 0.011±0.00 0.008±0.00 0.083±0.00 N/A N/A 0.024±0.02 0.009±0.00 0.085±0.05
ENST00000406935 N/A N/A N/A N/A 0.140±0.00 N/A 0.014±0.00 N/A N/A N/A 0.058±0.00 N/A N/A N/A
ENST00000441315 N/A N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000443026 N/A 0.042±0.00 0.328±0.00 0.014±0.00 N/A 0.085±0.00 0.038±0.00 0.077±0.00 0.016±0.00 0.020±0.00 0.054±0.00 0.048±0.00 N/A N/A
ENST00000477094 N/A N/A 0.491±0.00 N/A N/A N/A N/A N/A 1.909±0.00 0.105±0.00 N/A 0.038±0.01 0.030±0.00 N/A
ENSG00000164651 ENST00000361443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.145±0.00 N/A
ENST00000418710 N/A N/A N/A N/A N/A 0.215±0.00 N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A
ENST00000617581 N/A N/A N/A 0.317±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.03 0.156±0.04
ENSG00000179460 ENST00000429983 0.011±0.00 0.012±0.00 N/A N/A 0.024±0.00 N/A N/A N/A N/A 0.022±0.00 0.020±0.00 N/A N/A 0.011±0.00
ENSG00000219451 ENST00000405810 0.389±0.00 0.410±0.00 N/A 0.215±0.06 0.190±0.00 0.656±0.00 0.106±0.00 0.268±0.00 0.173±0.00 0.201±0.14 0.441±0.00 0.697±0.54 0.376±0.00 0.302±0.14
ENSG00000223866 ENST00000435098 N/A N/A N/A 0.815±0.00 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00
ENSG00000232790 ENST00000447262 N/A N/A N/A N/A 0.324±0.00 N/A N/A N/A N/A N/A N/A N/A 0.124±0.00 0.297±0.00
ENSG00000234839 ENST00000443431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.122±0.00 0.122±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000048562 ENSMUST00000063918 N/A N/A 0.020±0.01 1.245±0.83 N/A N/A N/A N/A 0.011±0.01 N/A N/A N/A 0.021±0.01 0.002±0.00
ENSMUSG00000072791 ENSMUST00000035515 0.012±0.00 N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A N/A N/A 0.135±0.08 0.009±0.01 0.380±0.34
ENSMUST00000100982 N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A N/A N/A N/A 0.114±0.06 N/A N/A
ENSMUST00000177311 0.100±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.377±0.17 N/A N/A

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