C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen triple helix repeat containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164932 CTHRC1 9606 + 8:103371515-103382997 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330295 CTHRC1-001 103371515-103382997 protein_coding
  ENST00000415886 CTHRC1-004 103371550-103376051 protein_coding
  ENST00000520337 CTHRC1-003 103372433-103382989 protein_coding
  ENST00000520880 CTHRC1-002 103377138-103382614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330295ENST00000415886ENST00000520337ENST00000520880
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330295 17.021±0.00 5.020±0.00 0.904±0.00 7.426±1.78 1.119±0.82 0.426±0.35 0.698±0.00 0.722±0.57 1.998±0.00 0.313±0.00 7.574±5.32 29.637±4.60 3.449±2.53
ENST00000415886 N/A N/A 0.121±0.00 N/A N/A N/A 0.566±0.00 2.804±0.00 1.154±0.61 0.257±0.00 3.793±0.94 16.049±0.00 1.446±0.00
ENST00000520337 N/A 0.723±0.00 0.147±0.00 N/A N/A N/A 0.218±0.00 N/A N/A N/A 0.671±0.00 N/A N/A
ENST00000520880 N/A 1.667±0.00 N/A N/A 1.167±0.00 N/A N/A N/A N/A 0.399±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060D CIL_00060D_0001 CGP 8:103298433-103382997
CIL_0004T6 CIL_0004T6_0002 CGP 8:103371515-103415189

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005109 IEA frizzled binding
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005615 IDA extracellular space
GO:0005737 IEA cytoplasm
GO:0016477 IEA cell migration
GO:0017147 IEA Wnt-protein binding
GO:0031012 IEA extracellular matrix
GO:0032092 IEA positive regulation of protein binding
GO:0033690 IEA positive regulation of osteoblast proliferation
GO:0043932 IEA ossification involved in bone remodeling
GO:0045669 IEA positive regulation of osteoblast differentiation
GO:0060071 IEA Wnt signaling pathway, planar cell polarity pathway
GO:0060122 IEA inner ear receptor stereocilium organization
GO:0090090 IEA negative regulation of canonical Wnt signaling pathway
GO:0090103 IEA cochlea morphogenesis
GO:0090177 IEA establishment of planar polarity involved in neural tube closure

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001971 cthrc1b collagen triple helix repeat containing 1b protein_coding Danio_rerio
ENSDARG00000087198 cthrc1a collagen triple helix repeat containing 1a protein_coding Danio_rerio
ENSMUSG00000054196 Cthrc1 collagen triple helix repeat containing 1 protein_coding Mus_musculus

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