C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen triple helix repeat containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054196 Cthrc1 10090 + 15:39076932-39087121 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067072 Cthrc1-001 39076932-39087119 protein_coding
  ENSMUST00000132192 Cthrc1-003 39077081-39081619 processed_transcript
  ENSMUST00000144800 Cthrc1-004 39084070-39087121 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067072ENSMUST00000132192ENSMUST00000144800
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067072 1.055±0.26 3.431±1.05 1.680±0.26 6.264±4.24 2.270±0.28 0.494±0.15 0.241±0.08 0.226±0.09 0.809±0.67 2.403±0.41 0.160±0.09 1.605±0.85 5.165±2.42 0.264±0.14
ENSMUST00000132192 N/A N/A N/A 0.739±0.00 N/A N/A N/A 0.273±0.01 N/A N/A 0.313±0.16 1.339±0.00 3.049±0.91 0.499±0.00
ENSMUST00000144800 N/A N/A N/A N/A N/A 0.291±0.08 N/A 0.236±0.08 0.105±0.00 N/A 0.144±0.06 0.538±0.28 N/A 0.079±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060D CIL_00060D_0002 CGP 15:39006280-39087121
CIL_0004T6 CIL_0004T6_0003 CGP 15:39076932-39112716

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005109 IPI frizzled binding
GO:0005515 IPI protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005615 IEA extracellular space
GO:0005737 IDA cytoplasm
GO:0016477 IEA cell migration
GO:0017147 IPI Wnt-protein binding
GO:0031012 IEA extracellular matrix
GO:0032092 IDA positive regulation of protein binding
GO:0033690 IMP positive regulation of osteoblast proliferation
GO:0043932 IMP ossification involved in bone remodeling
GO:0045669 IMP positive regulation of osteoblast differentiation
GO:0060071 IMP Wnt signaling pathway, planar cell polarity pathway
GO:0060122 IGI inner ear receptor stereocilium organization
GO:0090090 IDA negative regulation of canonical Wnt signaling pathway
GO:0090103 IGI cochlea morphogenesis
GO:0090177 IGI establishment of planar polarity involved in neural tube closure

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001971 cthrc1b collagen triple helix repeat containing 1b protein_coding Danio_rerio
ENSDARG00000087198 cthrc1a collagen triple helix repeat containing 1a protein_coding Danio_rerio
ENSG00000164932 CTHRC1 collagen triple helix repeat containing 1 protein_coding Homo_sapiens

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