C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen triple helix repeat containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330295 CTHRC1-001 ENSG00000164932 9606 + 8:103371515-103382997 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330295
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330295 17.021±0.00 5.020±0.00 0.904±0.00 7.426±1.78 1.119±0.82 0.426±0.35 0.698±0.00 0.722±0.57 1.998±0.00 0.313±0.00 7.574±5.32 29.637±4.60 3.449±2.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060D CIL_00060D_0001 CGP 8:103298433-103382997
CIL_0004T6 CIL_0004T6_0002 CGP 8:103371515-103415189

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005109 IEA frizzled binding
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005615 IDA extracellular space
GO:0005737 IEA cytoplasm
GO:0016477 IEA cell migration
GO:0017147 IEA Wnt-protein binding
GO:0031012 IEA extracellular matrix
GO:0032092 IEA positive regulation of protein binding
GO:0033690 IEA positive regulation of osteoblast proliferation
GO:0043932 IEA ossification involved in bone remodeling
GO:0045669 IEA positive regulation of osteoblast differentiation
GO:0060071 IEA Wnt signaling pathway, planar cell polarity pathway
GO:0060122 IEA inner ear receptor stereocilium organization
GO:0090090 IEA negative regulation of canonical Wnt signaling pathway
GO:0090103 IEA cochlea morphogenesis
GO:0090177 IEA establishment of planar polarity involved in neural tube closure

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067072 Cthrc1-001 protein_coding Mus_musculus 0 948
ENSMUST00000144800 Cthrc1-004 retained_intron Mus_musculus 0 532

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