C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165006 UBAP1 9606 + 9:34179013-34252523 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297661 UBAP1-001 34179013-34252523 protein_coding
  ENST00000359544 UBAP1-002 34220439-34252522 protein_coding
  ENST00000379186 UBAP1-003 34179038-34252520 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297661ENST00000359544ENST00000379186
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297661 9.992±0.00 8.646±0.00 2.925±0.00 5.730±4.38 8.043±0.00 8.464±6.30 8.885±8.05 15.779±0.00 3.952±0.96 21.400±19.20 14.418±9.92 16.203±8.14 17.082±2.53 26.311±7.65
ENST00000359544 N/A 6.408±0.00 N/A 0.944±0.00 2.626±0.00 4.615±0.00 N/A 5.331±0.76 3.728±2.82 N/A 10.388±0.00 7.361±0.00 5.231±0.00 N/A
ENST00000379186 N/A N/A N/A 4.226±0.00 1.771±0.00 1.591±0.00 0.716±0.00 N/A N/A 0.618±0.00 N/A 1.619±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004U CIL_00004U_0001 CGP 9:34086387-34252523
CIL_0005IT CIL_0005IT_0001 CGP 9:34179013-34329200

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000813 IDA ESCRT I complex
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0015031 IEA protein transport
GO:0043130 IDA ubiquitin binding
GO:0043162 IMP ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058746 ubap1 ubiquitin associated protein 1 protein_coding Danio_rerio
ENSMUSG00000028437 Ubap1 ubiquitin-associated protein 1 protein_coding Mus_musculus

Loading